7S07

Crystal structure of Epstein-Barr virus glycoprotein gH/gL/gp42-peptide in complex with human neutralizing antibodies 769B10 and 769C2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.29 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.247 

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This is version 1.2 of the entry. See complete history


Literature

Epstein-Barr virus gH/gL has multiple sites of vulnerability for virus neutralization and fusion inhibition.

Chen, W.H.Kim, J.Bu, W.Board, N.L.Tsybovsky, Y.Wang, Y.Hostal, A.Andrews, S.F.Gillespie, R.A.Choe, M.Stephens, T.Yang, E.S.Pegu, A.Peterson, C.E.Fisher, B.E.Mascola, J.R.Pittaluga, S.McDermott, A.B.Kanekiyo, M.Joyce, M.G.Cohen, J.I.

(2022) Immunity 55: 2135-2148.e6

  • DOI: https://doi.org/10.1016/j.immuni.2022.10.003
  • Primary Citation of Related Structures:  
    7S07, 7S08, 7S0J, 7S1B

  • PubMed Abstract: 

    Epstein-Barr virus (EBV) is nearly ubiquitous in adults. EBV causes infectious mononucleosis and is associated with B cell lymphomas, epithelial cell malignancies, and multiple sclerosis. The EBV gH/gL glycoprotein complex facilitates fusion of virus membrane with host cells and is a target of neutralizing antibodies. Here, we examined the sites of vulnerability for virus neutralization and fusion inhibition within EBV gH/gL. We developed a panel of human monoclonal antibodies (mAbs) that targeted five distinct antigenic sites on EBV gH/gL and prevented infection of epithelial and B cells. Structural analyses using X-ray crystallography and electron microscopy revealed multiple sites of vulnerability and defined the antigenic landscape of EBV gH/gL. One mAb provided near-complete protection against viremia and lymphoma in a humanized mouse EBV challenge model. Our findings provide structural and antigenic knowledge of the viral fusion machinery, yield a potential therapeutic antibody to prevent EBV disease, and emphasize gH/gL as a target for herpesvirus vaccines and therapeutics.


  • Organizational Affiliation

    Emerging Infectious Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD, USA; Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD 20817, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoprotein H657human gammaherpesvirus 4Mutation(s): 0 
Gene Names: gHBXLF2
UniProt
Find proteins for P03231 (Epstein-Barr virus (strain B95-8))
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Go to UniProtKB:  P03231
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UniProt GroupP03231
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoprotein L98human gammaherpesvirus 4Mutation(s): 0 
Gene Names: gLBKRF2
UniProt
Find proteins for P03212 (Epstein-Barr virus (strain B95-8))
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Go to UniProtKB:  P03212
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UniProt GroupP03212
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Soluble gp4233human gammaherpesvirus 4Mutation(s): 0 
Gene Names: BZLF2
UniProt
Find proteins for P03205 (Epstein-Barr virus (strain B95-8))
Explore P03205 
Go to UniProtKB:  P03205
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UniProt GroupP03205
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
769C2 Fab Heavy chainD [auth X]225Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
769C2 Fab Light chainE [auth Y]215Homo sapiensMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
769B10 Fab heavy chainF [auth H]234Homo sapiensMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
769B10 Fab light chainG [auth L]214Homo sapiensMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.29 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.247 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.695α = 90
b = 130.368β = 104.59
c = 93.612γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States1ZIAAI000978-13

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-09
    Type: Initial release
  • Version 1.1: 2022-11-16
    Changes: Database references
  • Version 1.2: 2023-10-18
    Changes: Data collection, Refinement description