A Long-range Interaction Affects Brightness and pH Stability of a Dark Fluorescent Protein
Huang, M., Zhang, S., Deng, M., Zou, Y., Lin, M.Z., Ng, H.L., Chu, J.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
darkmRuby | A [auth B], B [auth A] | 235 | Entacmaea quadricolor | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | C [auth B], D [auth B], E [auth B], F [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
NRQ Query on NRQ | A [auth B], B [auth A] | L-PEPTIDE LINKING | C16 H17 N3 O4 S | MET, TYR, GLY |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 107.54 | α = 90 |
b = 76.93 | β = 90.99 |
c = 66.65 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |