Crystal structure of a new fluorescent protein darkmRuby at pH 5.0
Huang, M., Zhang, S., Deng, M., Zou, Y., Lin, M.Z., Ng, H.L., Chu, J.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
darkmRuby | A [auth B], B [auth A] | 235 | Entacmaea quadricolor | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | I [auth B], R [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | C [auth B] D [auth B] E [auth B] F [auth B] G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACT Query on ACT | P [auth A], Q [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
NRQ Query on NRQ | A [auth B], B [auth A] | L-PEPTIDE LINKING | C16 H17 N3 O4 S | MET, TYR, GLY |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 73.571 | α = 90 |
b = 101.685 | β = 90 |
c = 134.983 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
SCALA | data scaling |
PHASER | phasing |