Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 38.53 kDa 
• Atom Count: 2704 
• Modelled Residue Count: 333 
• Deposited Residue Count: 336 
• Unique protein chains: 1

7RGR

Lysozyme 056 from Deep neural language modeling

• PDB DOI: 10.2210/pdb7RGR/pdb

• Classification: HYDROLASE
• Organism(s): synthetic construct
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-07-15 Released: 2021-07-28 
• Deposition Author(s): Fraser, J.S., Holton, J.M., Olmos Jr., J.L., Greene, E.R.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.48 Å
• R-Value Free: 0.296 
• R-Value Work: 0.259 
• R-Value Observed: 0.261 

Literature

Deep neural language modeling enables functional protein generation across families

Madani, A., Krause, B., Greene, E.R., Subramanian, S., Mohr, B.P., Olmos Jr., J.L., Holton, J.M., Xiong, C., Sun, Z.Z., Socher, R., Fraser, J.S., Naik, N.D.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Artificial protein L056	B [auth A], A [auth B]	168	synthetic construct	Mutation(s): 0  EC: 3.2.1.17

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NHE	C [auth B]	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID C8 H17 N O3 S MKWKNSIESPFAQN-UHFFFAOYSA-N
CL	D [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.48 Å
• R-Value Free: 0.296 
• R-Value Work: 0.259 
• R-Value Observed: 0.261 
• Space Group: P 2₁ 2₁ 2₁
• Diffraction Data DOI: 10.18430/m37rgr Protein Diffraction

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.15	α = 90
b = 68.1	β = 90
c = 95.41	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
BUCCANEER	model building
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2021-07-15 
• Released Date: 2021-07-28 
Deposition Author(s): Fraser, J.S., Holton, J.M., Olmos Jr., J.L., Greene, E.R.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM123159
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM124149
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM124169

Revision History  

• Version 1.0: 2021-07-28
  Type: Initial release