7R5K

Human nuclear pore complex (constricted)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12.0 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
E3 SUMO-protein ligase RanBP2A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
3224Homo sapiensMutation(s): 0 
Gene Names: RANBP2NUP358
EC: 2.3.2
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore membrane glycoprotein 2101887Homo sapiensMutation(s): 0 
Gene Names: NUP210KIAA0906PSEC0245
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
AladinN [auth 40],
O [auth 41]
546Homo sapiensMutation(s): 0 
Gene Names: AAASADRACALAGL003
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup93819Homo sapiensMutation(s): 0 
Gene Names: NUP93KIAA0095
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoporin NUP188 homologW [auth B0],
X [auth B1]
1749Homo sapiensMutation(s): 0 
Gene Names: NUP188KIAA0169
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup205Y [auth C0],
Z [auth C1],
AA [auth C2],
BA [auth C3],
CA [auth C4]
2012Homo sapiensMutation(s): 0 
Gene Names: NUP205C7orf14KIAA0225
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup1551391Homo sapiensMutation(s): 0 
Gene Names: NUP155KIAA0791
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoporin NDC1JA [auth E0],
KA [auth E1]
674Homo sapiensMutation(s): 0 
Gene Names: NDC1TMEM48
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoporin NUP35LA [auth F0],
MA [auth F1],
NA [auth F2],
OA [auth F3]
326Homo sapiensMutation(s): 0 
Gene Names: NUP35MP44NUP53
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoporin p54PA [auth H0],
QA [auth H1],
RA [auth H2],
SA [auth H3]
507Homo sapiensMutation(s): 0 
Gene Names: NUP54
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoporin p58/p45TA [auth I0],
UA [auth I1],
VA [auth I2],
WA [auth I3]
599Homo sapiensMutation(s): 0 
Gene Names: NUP58KIAA0410NUPL1
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore glycoprotein p62XA [auth J0],
YA [auth J1],
ZA [auth J2],
AB [auth J3],
BB [auth J4]
522Homo sapiensMutation(s): 0 
Gene Names: NUP62
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup133CB [auth K0],
DB [auth K1],
EB [auth K2],
FB [auth K3]
1156Homo sapiensMutation(s): 0 
Gene Names: NUP133
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup107GB [auth L0],
HB [auth L1],
IB [auth L2],
JB [auth L3]
925Homo sapiensMutation(s): 0 
Gene Names: NUP107
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup96KB [auth M0],
LB [auth M1],
MB [auth M2],
NB [auth M3]
937Homo sapiensMutation(s): 0 
Gene Names: NUP98ADAR2
EC: 3.4.21
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
Protein SEC13 homologOB [auth N0],
PB [auth N1],
QB [auth N2],
RB [auth N3]
322Homo sapiensMutation(s): 0 
Gene Names: SEC13D3S1231ESEC13ASEC13L1SEC13R
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Find proteins for P55735 (Homo sapiens)
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoporin SEH1SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
360Homo sapiensMutation(s): 0 
Gene Names: SEH1LSEC13LSEH1
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Find proteins for Q96EE3 (Homo sapiens)
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup85WB [auth P0],
XB [auth P1],
YB [auth P2],
ZB [auth P3]
656Homo sapiensMutation(s): 0 
Gene Names: NUP85NUP75PCNT1
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoporin Nup43AC [auth Q0],
BC [auth Q1],
CC [auth Q2],
DC [auth Q3]
380Homo sapiensMutation(s): 0 
Gene Names: NUP43
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup160EC [auth R0],
FC [auth R1],
GC [auth R2],
HC [auth R3]
1436Homo sapiensMutation(s): 0 
Gene Names: NUP160KIAA0197NUP120
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoporin Nup37IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
326Homo sapiensMutation(s): 0 
Gene Names: NUP37
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
Protein ELYSMC [auth T0],
NC [auth T1]
2266Homo sapiensMutation(s): 0 
Gene Names: AHCTF1ELYSTMBS62MSTP108
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup98880Homo sapiensMutation(s): 0 
Gene Names: NUP98ADAR2
EC: 3.4.21
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup214VC [auth V0]2090Homo sapiensMutation(s): 0 
Gene Names: NUP214CAINCANKIAA0023
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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear pore complex protein Nup88WC [auth W0]741Homo sapiensMutation(s): 0 
Gene Names: NUP88
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12.0 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union724349
German Federal Ministry for Education and ResearchGermany031L0100

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-22
    Type: Initial release