7R5K

Human nuclear pore complex (constricted)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DB [auth K1]SCOP2B SuperfamilyNucleoporin beta-propeller domain8043971 3000456 SCOP2B (2022-06-29)
DB [auth K1]SCOP2B SuperfamilyScaffolding nucleoporins8090957 3002255 SCOP2B (2022-06-29)
EB [auth K2]SCOP2B SuperfamilyScaffolding nucleoporins8090957 3002255 SCOP2B (2022-06-29)
EB [auth K2]SCOP2B SuperfamilyNucleoporin beta-propeller domain8043971 3000456 SCOP2B (2022-06-29)
FB [auth K3]SCOP2B SuperfamilyScaffolding nucleoporins8090957 3002255 SCOP2B (2022-06-29)
FB [auth K3]SCOP2B SuperfamilyNucleoporin beta-propeller domain8043971 3000456 SCOP2B (2022-06-29)
CB [auth K0]SCOP2B SuperfamilyNucleoporin beta-propeller domain8043971 3000456 SCOP2B (2022-06-29)
CB [auth K0]SCOP2B SuperfamilyScaffolding nucleoporins8090957 3002255 SCOP2B (2022-06-29)
MB [auth M2]SCOP2B SuperfamilyCoat and nuclear envelope proteins8054128 3002276 SCOP2B (2022-06-29)
KB [auth M0]SCOP2B SuperfamilyCoat and nuclear envelope proteins8054128 3002276 SCOP2B (2022-06-29)
LB [auth M1]SCOP2B SuperfamilyCoat and nuclear envelope proteins8054128 3002276 SCOP2B (2022-06-29)
NB [auth M3]SCOP2B SuperfamilyCoat and nuclear envelope proteins8054128 3002276 SCOP2B (2022-06-29)
OC [auth U0]SCOP2B SuperfamilyZU5 domain-like8091407 3002026 SCOP2B (2022-06-29)
TA [auth I0]SCOP2B SuperfamilyNup58-like8053256 3002169 SCOP2B (2022-06-29)
UA [auth I1]SCOP2B SuperfamilyNup58-like8053256 3002169 SCOP2B (2022-06-29)
VA [auth I2]SCOP2B SuperfamilyNup58-like8053256 3002169 SCOP2B (2022-06-29)
WA [auth I3]SCOP2B SuperfamilyNup58-like8053256 3002169 SCOP2B (2022-06-29)
XA [auth J0]SCOP2B SuperfamilyNup62-like8053268 3002170 SCOP2B (2022-06-29)
YA [auth J1]SCOP2B SuperfamilyNup62-like8053268 3002170 SCOP2B (2022-06-29)
ZA [auth J2]SCOP2B SuperfamilyNup62-like8053268 3002170 SCOP2B (2022-06-29)
AB [auth J3]SCOP2B SuperfamilyNup62-like8053268 3002170 SCOP2B (2022-06-29)
BB [auth J4]SCOP2B SuperfamilyNup62-like8053268 3002170 SCOP2B (2022-06-29)
WB [auth P0]SCOP2B SuperfamilyCoat and nuclear envelope proteins8054125 3002276 SCOP2B (2022-06-29)
XB [auth P1]SCOP2B SuperfamilyCoat and nuclear envelope proteins8054125 3002276 SCOP2B (2022-06-29)
YB [auth P2]SCOP2B SuperfamilyCoat and nuclear envelope proteins8054125 3002276 SCOP2B (2022-06-29)
ZB [auth P3]SCOP2B SuperfamilyCoat and nuclear envelope proteins8054125 3002276 SCOP2B (2022-06-29)
EC [auth R0]SCOP2B SuperfamilyScaffolding nucleoporins8090984 3002255 SCOP2B (2022-06-29)
EC [auth R0]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090976 3000456 SCOP2B (2022-06-29)
FC [auth R1]SCOP2B SuperfamilyScaffolding nucleoporins8090984 3002255 SCOP2B (2022-06-29)
FC [auth R1]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090976 3000456 SCOP2B (2022-06-29)
HC [auth R3]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090976 3000456 SCOP2B (2022-06-29)
HC [auth R3]SCOP2B SuperfamilyScaffolding nucleoporins8090984 3002255 SCOP2B (2022-06-29)
GC [auth R2]SCOP2B SuperfamilyScaffolding nucleoporins8090984 3002255 SCOP2B (2022-06-29)
GC [auth R2]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090976 3000456 SCOP2B (2022-06-29)
R [auth A2]SCOP2B SuperfamilyScaffolding nucleoporins8090313 3002255 SCOP2B (2022-06-29)
S [auth A3]SCOP2B SuperfamilyScaffolding nucleoporins8090313 3002255 SCOP2B (2022-06-29)
T [auth A4]SCOP2B SuperfamilyScaffolding nucleoporins8090313 3002255 SCOP2B (2022-06-29)
V [auth A6]SCOP2B SuperfamilyScaffolding nucleoporins8090313 3002255 SCOP2B (2022-06-29)
P [auth A0]SCOP2B SuperfamilyScaffolding nucleoporins8090313 3002255 SCOP2B (2022-06-29)
Q [auth A1]SCOP2B SuperfamilyScaffolding nucleoporins8090313 3002255 SCOP2B (2022-06-29)
U [auth A5]SCOP2B SuperfamilyScaffolding nucleoporins8090313 3002255 SCOP2B (2022-06-29)
W [auth B0]SCOP2B SuperfamilyScaffolding nucleoporins8053964 3002255 SCOP2B (2022-06-29)
X [auth B1]SCOP2B SuperfamilyScaffolding nucleoporins8053964 3002255 SCOP2B (2022-06-29)
EA [auth D1]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090969 3000456 SCOP2B (2022-06-29)
EA [auth D1]SCOP2B SuperfamilyScaffolding nucleoporins8090958 3002255 SCOP2B (2022-06-29)
FA [auth D2]SCOP2B SuperfamilyScaffolding nucleoporins8090958 3002255 SCOP2B (2022-06-29)
FA [auth D2]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090969 3000456 SCOP2B (2022-06-29)
GA [auth D3]SCOP2B SuperfamilyScaffolding nucleoporins8090958 3002255 SCOP2B (2022-06-29)
GA [auth D3]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090969 3000456 SCOP2B (2022-06-29)
HA [auth D4]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090969 3000456 SCOP2B (2022-06-29)
HA [auth D4]SCOP2B SuperfamilyScaffolding nucleoporins8090958 3002255 SCOP2B (2022-06-29)
IA [auth D5]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090969 3000456 SCOP2B (2022-06-29)
IA [auth D5]SCOP2B SuperfamilyScaffolding nucleoporins8090958 3002255 SCOP2B (2022-06-29)
DA [auth D0]SCOP2B SuperfamilyScaffolding nucleoporins8090958 3002255 SCOP2B (2022-06-29)
DA [auth D0]SCOP2B SuperfamilyNucleoporin beta-propeller domain8090969 3000456 SCOP2B (2022-06-29)
MA [auth F1]SCOP2B SuperfamilyRNA-binding domain RBD8087390 3000110 SCOP2B (2022-06-29)
NA [auth F2]SCOP2B SuperfamilyRNA-binding domain RBD8087390 3000110 SCOP2B (2022-06-29)
LA [auth F0]SCOP2B SuperfamilyRNA-binding domain RBD8087390 3000110 SCOP2B (2022-06-29)
OA [auth F3]SCOP2B SuperfamilyRNA-binding domain RBD8087390 3000110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N [auth 40]ANAPC4_WD40_14e7r5k401 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_14ECOD (1.6)
O [auth 41]ANAPC4_WD40_14e7r5k411 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_14ECOD (1.6)
DB [auth K1]Nucleoporin_Ne7r5kK12 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
DB [auth K1]Nucleoporin_C_Ce7r5kK11 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
EB [auth K2]Nucleoporin_Ne7r5kK22 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
EB [auth K2]Nucleoporin_C_Ce7r5kK21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
FB [auth K3]Nucleoporin_Ne7r5kK32 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
FB [auth K3]Nucleoporin_C_Ce7r5kK31 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
CB [auth K0]Nucleoporin_Ne7r5kK02 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
CB [auth K0]Nucleoporin_C_Ce7r5kK01 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
OC [auth U0]Nucleoporin2e7r5kU01 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related (From Topology)T: ZU5/Nup98-C/GAIN-B autoproteolytic domain-relatedF: Nucleoporin2ECOD (1.6)
OB [auth N0]ANAPC4_WD40_4e7r5kN01 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
PB [auth N1]ANAPC4_WD40_4e7r5kN11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
QB [auth N2]ANAPC4_WD40_4e7r5kN21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
RB [auth N3]ANAPC4_WD40_4e7r5kN31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
TB [auth O1]ANAPC4_WD40_6e7r5kO11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
SB [auth O0]ANAPC4_WD40_6e7r5kO01 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
UB [auth O2]ANAPC4_WD40_6e7r5kO21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
VB [auth O3]ANAPC4_WD40_6e7r5kO31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
WB [auth P0]Nucleopor_Nup85e7r5kP01 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
XB [auth P1]Nucleopor_Nup85e7r5kP11 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
YB [auth P2]Nucleopor_Nup85e7r5kP21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
ZB [auth P3]Nucleopor_Nup85e7r5kP31 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
AC [auth Q0]ANAPC4_WD40_2e7r5kQ01 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
BC [auth Q1]ANAPC4_WD40_2e7r5kQ11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
CC [auth Q2]ANAPC4_WD40_2e7r5kQ21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
DC [auth Q3]ANAPC4_WD40_2e7r5kQ31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
IC [auth S0]ANAPC4_WD40_10e7r5kS01 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
KC [auth S2]ANAPC4_WD40_10e7r5kS21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
LC [auth S3]ANAPC4_WD40_10e7r5kS31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
JC [auth S1]ANAPC4_WD40_10e7r5kS11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
EA [auth D1]Nucleoporin_Ne7r5kD12 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
EA [auth D1]Nucleoporin_C_C,Nucleoporin_C_Ne7r5kD11 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_C,Nucleoporin_C_NECOD (1.6)
FA [auth D2]Nucleoporin_Ne7r5kD22 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
FA [auth D2]Nucleoporin_C_C,Nucleoporin_C_Ne7r5kD21 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_C,Nucleoporin_C_NECOD (1.6)
GA [auth D3]Nucleoporin_Ne7r5kD32 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
GA [auth D3]Nucleoporin_C_C,Nucleoporin_C_Ne7r5kD31 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_C,Nucleoporin_C_NECOD (1.6)
HA [auth D4]Nucleoporin_Ne7r5kD42 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
HA [auth D4]Nucleoporin_C_C,Nucleoporin_C_Ne7r5kD41 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_C,Nucleoporin_C_NECOD (1.6)
IA [auth D5]Nucleoporin_Ne7r5kD52 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
IA [auth D5]Nucleoporin_C_C,Nucleoporin_C_Ne7r5kD51 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_C,Nucleoporin_C_NECOD (1.6)
DA [auth D0]Nucleoporin_Ne7r5kD02 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
DA [auth D0]Nucleoporin_C_C,Nucleoporin_C_Ne7r5kD01 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_C,Nucleoporin_C_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
N [auth 40],
O [auth 41]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth E0],
KA [auth E1]
PF09531Nucleoporin protein Ndc1-Nup (Ndc1_Nup)Nucleoporin protein Ndc1-Nup- Family
CB [auth K0],
DB [auth K1],
EB [auth K2],
FB [auth K3]
PF03177Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)Non-repetitive/WGA-negative nucleoporin C-terminal- Family
GB [auth L0],
HB [auth L1],
IB [auth L2],
JB [auth L3]
PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
KB [auth M0],
LB [auth M1],
MB [auth M2],
NB [auth M3]
PF12110Nuclear protein 96 (Nup96)Nuclear protein 96Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ...Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex. [1] [2]
Domain
MC [auth T0],
NC [auth T1]
PF13934Nuclear pore complex assembly (ELYS)Nuclear pore complex assembly- Family
MC [auth T0],
NC [auth T1]
PF16687beta-propeller of ELYS nucleoporin (ELYS-bb)beta-propeller of ELYS nucleoporin- Repeat
PF04096Nucleoporin autopeptidase (Nucleoporin2)Nucleoporin autopeptidase- Family
PA [auth H0],
QA [auth H1],
RA [auth H2],
SA [auth H3]
PF18437Nup54 C-terminal interacting domain (Nup54_C)Nup54 C-terminal interacting domainThe mammalian nuclear pore complex (NPC) conducts nucleocytoplasmic transport and contains multiple copies of nucleoporins (nups). This is the C-terminal interacting domain found on Nup54. Nup45 is a splice variant of Nup58 with an identical alpha-he ...The mammalian nuclear pore complex (NPC) conducts nucleocytoplasmic transport and contains multiple copies of nucleoporins (nups). This is the C-terminal interacting domain found on Nup54. Nup45 is a splice variant of Nup58 with an identical alpha-helical region. Nup54 along with Nup62 and Nup58 are essential for nuclear transport. The C-terminal part of the alpha-helical region of Nup54 interacts with a C-terminal part of the alpha-helical region of Nup58. Interestingly, this region appears in two distinct conformations: a single helix and a helix-loop-helix, termed 'straight' and 'bent'. Whereas the straight conformer consists of a 34 residues long alpha helix (residues 460-493), the bent conformer is composed of two alpha helices, each 13 residues long, connected by a central loop (N helix, residues 460-472; C helix, residues 477-489) [1].
Domain
PA [auth H0],
QA [auth H1],
RA [auth H2],
SA [auth H3]
PF13874Nucleoporin complex subunit 54 (Nup54)Nucleoporin complex subunit 54This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and ...This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and as such they would form a zone of equal affinity spanning the central channel. The diffusion of importin-beta import complexes through the central channel may be a stochastic process as the affinities are similar, whereas movement from cytoplasmic fibrils to the central channel and from the central channel to the nuclear basket would be facilitated by the subtle differences in affinity between them [1,2].
Domain
TA [auth I0],
UA [auth I1],
VA [auth I2],
WA [auth I3]
PF15967Nucleoporin FG repeated region (Nucleoporin_FG2)Nucleoporin FG repeated region- Family
AB [auth J3],
BB [auth J4],
XA [auth J0],
YA [auth J1],
ZA [auth J2]
PF05064Nsp1-like C-terminal region (Nsp1_C)Nsp1-like C-terminal region- Family
OB [auth N0],
PB [auth N1],
QB [auth N2],
RB [auth N3]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
WB [auth P0],
XB [auth P1],
YB [auth P2],
ZB [auth P3]
PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Family
AC [auth Q0],
BC [auth Q1],
CC [auth Q2],
DC [auth Q3]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF02368Bacterial Ig-like domain (group 2) (Big_2)Bacterial Ig-like domain (group 2)This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.Domain
EC [auth R0],
FC [auth R1],
GC [auth R2],
HC [auth R3]
PF11715Nucleoporin Nup120/160 (Nup160)Nucleoporin Nup120/160- Repeat
IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
WC [auth W0]PF10168Nuclear pore component (Nup88)Nuclear pore component- Repeat
PF04097Nup93/Nic96 (Nic96)Nup93/Nic96- Repeat
W [auth B0],
X [auth B1]
PF10487Nucleoporin Nup188, N-terminal (Nup188_N)Nucleoporin Nup188, N-terminal- Repeat
W [auth B0],
X [auth B1]
PF21093Nucleoporin Nup188, N-terminal subdomain III (Nup188_N-subdom_III)Nucleoporin Nup188, N-terminal subdomain III- Repeat
W [auth B0],
X [auth B1]
PF21094Nup188 SH3-like domain (Nup188_SH3-like)Nup188 SH3-like domainNup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1,2]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically loca ...Nup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1,2]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [3]. This protein folds into an extended stack of helices where the N-terminal forms a closed ring (subdivided into subdomains I-III in [2]) and the C-terminal forms a more regular, superhelical structure [2]. This entry represents a beta-stranded SH3-like domain inserted in subdomain III from Nup188 N-terminal region, which is a circular permutation from canonical SH3 domain [2].
Domain
AA [auth C2],
BA [auth C3],
CA [auth C4],
Y [auth C0],
Z [auth C1]
PF11894Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192)Nuclear pore complex scaffold, nucleoporins 186/192/205- Repeat
PF08801Nup133 N terminal like (Nucleoporin_N)Nup133 N terminal like- Repeat
LA [auth F0],
MA [auth F1],
NA [auth F2],
OA [auth F3]
PF05172Nup53/35/40-type RNA recognition motif (Nup35_RRM)Nup53/35/40-type RNA recognition motifMembers of this family belong to the nucleor pore complex, NPC, the only gateway between the nucleus and the cytoplasm. The NPC consists of several subcomplexes each one of which is made up of multiple copies of several individual Nup, Nic or Sec pro ...Members of this family belong to the nucleor pore complex, NPC, the only gateway between the nucleus and the cytoplasm. The NPC consists of several subcomplexes each one of which is made up of multiple copies of several individual Nup, Nic or Sec protein subunits. In yeast, this Nup or nucleoporin subunit is numbered Nup53, Nup40 in Schizo. pombe and in vertebrates as Nup35. This subunit forms part of the inner ring within the membrane and interacts directly with Nup-Ndc1, considered to be an anchor for the NPC in the pore membrane [1]. This region of the Nup is the RNA-recognition region [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
N [auth 40],
O [auth 41]
Aladin-
JA [auth E0],
KA [auth E1]
Nucleoporin NDC1
CB [auth K0],
DB [auth K1],
EB [auth K2],
FB [auth K3]
Nuclear pore complex protein Nup133
GB [auth L0],
HB [auth L1],
IB [auth L2],
JB [auth L3]
Nuclear pore complex protein Nup107
KB [auth M0],
LB [auth M1],
MB [auth M2],
NB [auth M3]
Nuclear pore complex protein Nup96
MC [auth T0],
NC [auth T1]
Protein ELYS
Nuclear pore complex protein Nup98
VC [auth V0]Nuclear pore complex protein Nup214
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
E3 SUMO-protein ligase RanBP2
PA [auth H0],
QA [auth H1],
RA [auth H2],
SA [auth H3]
Nucleoporin p54
TA [auth I0],
UA [auth I1],
VA [auth I2],
WA [auth I3]
Nucleoporin p58/p45
AB [auth J3],
BB [auth J4],
XA [auth J0],
YA [auth J1],
ZA [auth J2]
Nuclear pore glycoprotein p62
OB [auth N0],
PB [auth N1],
QB [auth N2],
RB [auth N3]
Protein SEC13 homolog
SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
Nucleoporin SEH1
WB [auth P0],
XB [auth P1],
YB [auth P2],
ZB [auth P3]
Nuclear pore complex protein Nup85
AC [auth Q0],
BC [auth Q1],
CC [auth Q2],
DC [auth Q3]
Nucleoporin Nup43-
Nuclear pore membrane glycoprotein 210-
EC [auth R0],
FC [auth R1],
GC [auth R2],
HC [auth R3]
Nuclear pore complex protein Nup160
IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
Nucleoporin Nup37-
WC [auth W0]Nuclear pore complex protein Nup88
Nuclear pore complex protein Nup93
W [auth B0],
X [auth B1]
Nucleoporin NUP188 homolog
AA [auth C2],
BA [auth C3],
CA [auth C4],
Y [auth C0],
Z [auth C1]
Nuclear pore complex protein Nup205
Nuclear pore complex protein Nup155
LA [auth F0],
MA [auth F1],
NA [auth F2],
OA [auth F3]
Nucleoporin NUP35

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
N [auth 40],
O [auth 41]
IPR019775WD40 repeat, conserved siteConserved Site
N [auth 40],
O [auth 41]
IPR045139AladinFamily
N [auth 40],
O [auth 41]
IPR001680WD40 repeatRepeat
N [auth 40],
O [auth 41]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth E0],
KA [auth E1]
IPR019049Nucleoporin protein Ndc1-NupFamily
CB [auth K0],
DB [auth K1],
EB [auth K2],
FB [auth K3]
IPR037624Nuclear pore complex protein Nup133-likeFamily
CB [auth K0],
DB [auth K1],
EB [auth K2],
FB [auth K3]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CB [auth K0],
DB [auth K1],
EB [auth K2],
FB [auth K3]
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
GB [auth L0],
HB [auth L1],
IB [auth L2],
JB [auth L3]
IPR007252Nuclear pore protein 84/107Family
KB [auth M0],
LB [auth M1],
MB [auth M2],
NB [auth M3]
IPR037665Nucleoporin peptidase S59-likeFamily
KB [auth M0],
LB [auth M1],
MB [auth M2],
NB [auth M3]
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
KB [auth M0],
LB [auth M1],
MB [auth M2],
NB [auth M3]
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
KB [auth M0],
LB [auth M1],
MB [auth M2],
NB [auth M3]
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
MC [auth T0],
NC [auth T1]
IPR025151ELYS-like domainDomain
MC [auth T0],
NC [auth T1]
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
MC [auth T0],
NC [auth T1]
IPR032040ELYS, beta-propeller domainDomain
IPR037665Nucleoporin peptidase S59-likeFamily
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
VC [auth V0]IPR041553Nuclear pore complex protein Nup214, phenylalanine-glycine (FG) domainDomain
VC [auth V0]IPR001680WD40 repeatRepeat
VC [auth V0]IPR026054Nuclear pore complex proteinFamily
VC [auth V0]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR022011Nup358/RanBP2 E3 ligase domainDomain
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR011993PH-like domain superfamilyHomologous Superfamily
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR019734Tetratricopeptide repeatRepeat
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR036443Zinc finger, RanBP2-type superfamilyHomologous Superfamily
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR000156Ran binding domainDomain
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR001876Zinc finger, RanBP2-typeDomain
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
IPR045255Ran binding protein RanBP1-likeFamily
PA [auth H0],
QA [auth H1],
RA [auth H2],
SA [auth H3]
IPR040985Nup54, C-terminal interacting domainDomain
PA [auth H0],
QA [auth H1],
RA [auth H2],
SA [auth H3]
IPR024864Nucleoporin Nup54/Nup57/Nup44Family
PA [auth H0],
QA [auth H1],
RA [auth H2],
SA [auth H3]
IPR025712Nucleoporin Nup54, alpha-helical domainDomain
TA [auth I0],
UA [auth I1],
VA [auth I2],
WA [auth I3]
IPR024882Nucleoporin p58/p45/NUP49Family
AB [auth J3],
BB [auth J4],
XA [auth J0],
YA [auth J1],
ZA [auth J2]
IPR007758Nucleoporin, NSP1-like, C-terminalDomain
AB [auth J3],
BB [auth J4],
XA [auth J0],
YA [auth J1],
ZA [auth J2]
IPR026010Nucleoporin NSP1/NUP62Family
OB [auth N0],
PB [auth N1],
QB [auth N2],
RB [auth N3]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OB [auth N0],
PB [auth N1],
QB [auth N2],
RB [auth N3]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OB [auth N0],
PB [auth N1],
QB [auth N2],
RB [auth N3]
IPR037363Sec13/Seh1 familyFamily
OB [auth N0],
PB [auth N1],
QB [auth N2],
RB [auth N3]
IPR001680WD40 repeatRepeat
SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
IPR037363Sec13/Seh1 familyFamily
SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
IPR001680WD40 repeatRepeat
SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
IPR020472G-protein beta WD-40 repeatRepeat
WB [auth P0],
XB [auth P1],
YB [auth P2],
ZB [auth P3]
IPR011502Nucleoporin Nup85-likeFamily
AC [auth Q0],
BC [auth Q1],
CC [auth Q2],
DC [auth Q3]
IPR019775WD40 repeat, conserved siteConserved Site
AC [auth Q0],
BC [auth Q1],
CC [auth Q2],
DC [auth Q3]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AC [auth Q0],
BC [auth Q1],
CC [auth Q2],
DC [auth Q3]
IPR001680WD40 repeatRepeat
AC [auth Q0],
BC [auth Q1],
CC [auth Q2],
DC [auth Q3]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR045197Nuclear pore membrane glycoprotein 210-likeFamily
IPR003343Bacterial Ig-like domain, group 2Domain
IPR008964Invasin/intimin cell-adhesion fragmentsHomologous Superfamily
EC [auth R0],
FC [auth R1],
GC [auth R2],
HC [auth R3]
IPR021717Nucleoporin Nup120/160Family
IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
IPR019775WD40 repeat, conserved siteConserved Site
IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
IPR037626Nucleoporin Nup37Family
IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
IPR001680WD40 repeatRepeat
IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
WC [auth W0]IPR037700Nucleoporin NUP88/NUP82Family
WC [auth W0]IPR019321Nucleoporin Nup88Family
IPR007231Nucleoporin interacting component Nup93/Nic96Family
W [auth B0],
X [auth B1]
IPR016024Armadillo-type foldHomologous Superfamily
W [auth B0],
X [auth B1]
IPR044840Nucleoporin Nup188Family
W [auth B0],
X [auth B1]
IPR048883Nucleoporin Nup188, N-terminal subdomain IIIDomain
W [auth B0],
X [auth B1]
IPR018864Nucleoporin Nup188, N-terminalDomain
AA [auth C2],
BA [auth C3],
CA [auth C4],
Y [auth C0],
Z [auth C1]
IPR021827Nucleoporin Nup186/Nup192/Nup205Family
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2Homologous Superfamily
IPR042533Nucleoporin, Nup155-like, C-terminal, subdomain 1Homologous Superfamily
IPR042538Nucleoporin, Nup155-like, C-terminal, subdomain 3Homologous Superfamily
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
IPR004870Nucleoporin, Nup155-likeFamily
LA [auth F0],
MA [auth F1],
NA [auth F2],
OA [auth F3]
IPR017389Nucleoporin, NUP53Family
LA [auth F0],
MA [auth F1],
NA [auth F2],
OA [auth F3]
IPR007846RNA-recognition motif (RRM) Nup35-type domainDomain
LA [auth F0],
MA [auth F1],
NA [auth F2],
OA [auth F3]
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth F0],
MA [auth F1],
NA [auth F2],
OA [auth F3]
IPR035979RNA-binding domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
N [auth 40],
O [auth 41]
PharosQ9NRG9
JA [auth E0],
KA [auth E1]
PharosQ9BTX1
CB [auth K0],
DB [auth K1],
EB [auth K2],
FB [auth K3]
PharosQ8WUM0
GB [auth L0],
HB [auth L1],
IB [auth L2],
JB [auth L3]
PharosP57740
KB [auth M0],
LB [auth M1],
MB [auth M2],
NB [auth M3]
PharosP52948
MC [auth T0],
NC [auth T1]
PharosQ8WYP5
PharosP52948
VC [auth V0]PharosP35658
A [auth 00],
B [auth 01],
C [auth 02],
D [auth 03],
E [auth 04]
PharosP49792
PA [auth H0],
QA [auth H1],
RA [auth H2],
SA [auth H3]
PharosQ7Z3B4
TA [auth I0],
UA [auth I1],
VA [auth I2],
WA [auth I3]
PharosQ9BVL2
AB [auth J3],
BB [auth J4],
XA [auth J0],
YA [auth J1],
ZA [auth J2]
PharosP37198
OB [auth N0],
PB [auth N1],
QB [auth N2],
RB [auth N3]
PharosP55735
SB [auth O0],
TB [auth O1],
UB [auth O2],
VB [auth O3]
PharosQ96EE3
WB [auth P0],
XB [auth P1],
YB [auth P2],
ZB [auth P3]
PharosQ9BW27
AC [auth Q0],
BC [auth Q1],
CC [auth Q2],
DC [auth Q3]
PharosQ8NFH3
PharosQ8TEM1
EC [auth R0],
FC [auth R1],
GC [auth R2],
HC [auth R3]
PharosQ12769
IC [auth S0],
JC [auth S1],
KC [auth S2],
LC [auth S3]
PharosQ8NFH4
WC [auth W0]PharosQ99567
PharosQ8N1F7
W [auth B0],
X [auth B1]
PharosQ5SRE5
AA [auth C2],
BA [auth C3],
CA [auth C4],
Y [auth C0],
Z [auth C1]
PharosQ92621
PharosO75694
LA [auth F0],
MA [auth F1],
NA [auth F2],
OA [auth F3]
PharosQ8NFH5