7QIZ

Specific features and methylation sites of a plant 80S ribosome

  • Classification: RIBOSOME
  • Organism(s): Solanum lycopersicum
  • Mutation(s): Yes 

  • Deposited: 2021-12-16 Released: 2022-08-03 
  • Deposition Author(s): Cottilli, P., Itoh, Y., Amunts, A.
  • Funding Organization(s): Swedish Research Council, European Research Council (ERC), Knut and Alice Wallenberg Foundation, European Molecular Biology Organization (EMBO)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.38 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history. 


Literature

Cryo-EM structure and rRNA modification sites of a plant ribosome.

Cottilli, P., Itoh, Y., Nobe, Y., Petrov, A.S., Lison, P., Taoka, M., Amunts, A.

(2022) Plant Commun 3: 100342-100342

  • DOI: https://doi.org/10.1016/j.xplc.2022.100342
  • Primary Citation of Related Structures:  
    7QIW, 7QIX, 7QIY, 7QIZ

  • PubMed Abstract: 

    Protein synthesis in crop plants contributes to the balance of food and fuel on our planet, which influences human metabolic activity and lifespan. Protein synthesis can be regulated with respect to changing environmental cues via the deposition of chemical modifications into rRNA. Here, we present the structure of a plant ribosome from tomato and a quantitative mass spectrometry analysis of its rRNAs. The study reveals fine features of the ribosomal proteins and 71 plant-specific rRNA modifications, and it re-annotates 30 rRNA residues in the available sequence. At the protein level, isoAsp is found in position 137 of uS11, and a zinc finger previously believed to be universal is missing from eL34, suggesting a lower effect of zinc deficiency on protein synthesis in plants. At the rRNA level, the plant ribosome differs markedly from its human counterpart with respect to the spatial distribution of modifications. Thus, it represents an additional layer of gene expression regulation, highlighting the molecular signature of a plant ribosome. The results provide a reference model of a plant ribosome for structural studies and an accurate marker for molecular ecology.

    • Organizational Affiliation: 

    Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17165 Solna, Sweden.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L8A [auth D]260Solanum lycopersicumMutation(s): 0 
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Find proteins for P29766 (Solanum lycopersicum)
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Ribos_L4_asso_C domain-containing proteinB [auth F]406Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7HW81 (Solanum lycopersicum)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L3C [auth E]389Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L18_c domain-containing proteinD [auth G]301Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7H274 (Solanum lycopersicum)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L6e_N domain-containing proteinE [auth H]229Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7GMA5 (Solanum lycopersicum)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Thaliana 60S ribosomal protein L7F [auth I]242Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L7Ae domain-containing proteinG [auth J]258Solanum lycopersicumMutation(s): 3 
UniProt
Find proteins for A0A3Q7GV73 (Solanum lycopersicum)
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein uL6H [auth K]194Solanum lycopersicumMutation(s): 0 
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Find proteins for A0A3Q7JDZ0 (Solanum lycopersicum)
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10I [auth L]220Solanum lycopersicumMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein uL5J [auth M]181Solanum lycopersicumMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13K [auth N]206Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L14e domain-containing proteinL [auth O]133Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15M [auth P]204Solanum lycopersicumMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
PectinesteraseN [auth Q]206Solanum lycopersicumMutation(s): 1 
EC: 3.1.1.11
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22, chloroplasticO [auth R]173Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L18e/L15P domain-containing proteinP [auth S]187Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7I5W4 (Solanum lycopersicum)
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L19Q [auth T]213Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7GQ29 (Solanum lycopersicum)
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18aR [auth U]178Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7IGB1 (Solanum lycopersicum)
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL21S [auth V]164Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7IJQ0 (Solanum lycopersicum)
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL22T [auth W]124Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein uL14U [auth X]140Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
TRASH domain-containing proteinV [auth Y]165Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7IN69 (Solanum lycopersicum)
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L23eN domain-containing proteinW [auth Z]154Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
KOW domain-containing proteinX [auth a]146Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7FBC6 (Solanum lycopersicum)
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27Y [auth b]135Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L18e/L15P domain-containing proteinZ [auth c]148Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29AA [auth d]60Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL30BA [auth e]112Solanum lycopersicumMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL31CA [auth f]120Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7JRW8 (Solanum lycopersicum)
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL32DA [auth g]133Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL33EA [auth h]112Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL34FA [auth i]120Solanum lycopersicumMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Similar to 60S ribosomal protein L35GA [auth j]123Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36HA [auth k]110Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37IA [auth l]95Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7FV98 (Solanum lycopersicum)
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38JA [auth m]69Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for P46291 (Solanum lycopersicum)
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL39KA [auth n]51Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
UbiquitinLA [auth o]128Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for K4B017 (Solanum lycopersicum)
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL42MA [auth p]105Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7FPL2 (Solanum lycopersicum)
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein eL43NA [auth q]92Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for K4CND1 (Solanum lycopersicum)
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L28e domain-containing proteinOA [auth r]143Solanum lycopersicumMutation(s): 0 
UniProt
Find proteins for A0A3Q7FVJ9 (Solanum lycopersicum)
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
KH type-2 domain-containing proteinUA [auth NA]239Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_S7 domain-containing proteinVA [auth OA]211Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
S10_plectin domain-containing proteinWA [auth PA]180Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein uS19XA [auth QA]151Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein uS9YA [auth RA]147Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein uS13ZA [auth TA]152Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein eS19AB [auth UA]143Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_S10 domain-containing proteinBB [auth VA]123Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein eS28CB [auth WA]65Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein uS14DB [auth XA]56Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
Mitogen-activated protein kinaseEB [auth YA]326Solanum lycopersicumMutation(s): 0 
EC: 2.7.11.24
UniProt
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25FB [auth ZA]108Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41IB [auth t]25Solanum lycopersicumMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein SAJB [auth u]296Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aKB [auth v]260Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4LB [auth w]264Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7MB [auth x]191Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8NB [auth y]220Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_S17_N domain-containing proteinOB [auth z]159Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17PB [auth AA]144Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21QB [auth BA]82Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
40S body ribosomal protein uS12RB [auth CA]142Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26SB [auth DA]127Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
S5 DRBM domain-containing proteinTB [auth EA]280Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6UB [auth FA]249Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
40S body ribosomal protein uS4VB [auth GA]197Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15, chloroplasticWB [auth HA]151Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S14XB [auth IA]150Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24YB [auth KA]133Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27ZB [auth LA]86Solanum lycopersicumMutation(s): 0 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30AC [auth MA]62Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15a-1BC [auth JA]130Solanum lycopersicumMutation(s): 0 
UniProt
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Entity ID: 42
MoleculeChains LengthOrganismImage
tRNAPA [auth s]2Solanum lycopersicum
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Entity ID: 43
MoleculeChains LengthOrganismImage
25S rRNAQA [auth 2]3,391Solanum lycopersicum
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Entity ID: 44
MoleculeChains LengthOrganismImage
5S rRNARA [auth 5]120Solanum lycopersicum
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Entity ID: 45
MoleculeChains LengthOrganismImage
5.8S rRNASA [auth 8]165Solanum lycopersicum
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Entity ID: 46
MoleculeChains LengthOrganismImage
18STA [auth S2]1,808Solanum lycopersicum
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Entity ID: 59
MoleculeChains LengthOrganismImage
tRNA_1GB [auth aA]14Solanum lycopersicum
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Entity ID: 60
MoleculeChains LengthOrganismImage
mRNAHB [auth bA]3Solanum lycopersicum
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Small Molecules
Ligands 7 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SPM
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VF [auth 2],
WF [auth 2],
YF [auth 2]		SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
BGC
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VU [auth NA]beta-D-glucopyranose
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
SPD
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XF [auth 2]SPERMIDINE
C7 H19 N3
ATHGHQPFGPMSJY-UHFFFAOYSA-N
PUT
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MR [auth S2]1,4-DIAMINOBUTANE
C4 H12 N2
KIDHWZJUCRJVML-UHFFFAOYSA-N
ZN
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AV [auth XA]
BV [auth DA]
QC [auth l]
RC [auth o]
TC [auth p]
AV [auth XA],
BV [auth DA],
QC [auth l],
RC [auth o],
TC [auth p],
UC [auth q]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K
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AD [auth 2]
AE [auth 2]
AF [auth 2]
AR [auth S2]
BD [auth 2]
AD [auth 2],
AE [auth 2],
AF [auth 2],
AR [auth S2],
BD [auth 2],
BE [auth 2],
BF [auth 2],
BR [auth S2],
CC [auth D],
CD [auth 2],
CE [auth 2],
CF [auth 2],
CR [auth S2],
DC [auth D],
DD [auth 2],
DE [auth 2],
DF [auth 2],
DQ [auth 8],
DR [auth S2],
EC [auth E],
ED [auth 2],
EE [auth 2],
EF [auth 2],
EQ [auth 8],
ER [auth S2],
FD [auth 2],
FE [auth 2],
FF [auth 2],
FQ [auth 8],
FR [auth S2],
GD [auth 2],
GE [auth 2],
GF [auth 2],
GQ [auth 8],
GR [auth S2],
HC [auth L],
HD [auth 2],
HE [auth 2],
HF [auth 2],
HR [auth S2],
ID [auth 2],
IE [auth 2],
IF [auth 2],
IR [auth S2],
JC [auth N],
JD [auth 2],
JE [auth 2],
JF [auth 2],
JR [auth S2],
KC [auth N],
KD [auth 2],
KE [auth 2],
KF [auth 2],
KR [auth S2],
LD [auth 2],
LE [auth 2],
LF [auth 2],
LR [auth S2],
MD [auth 2],
ME [auth 2],
MF [auth 2],
MQ [auth S2],
ND [auth 2],
NE [auth 2],
NF [auth 2],
NQ [auth S2],
OC [auth i],
OD [auth 2],
OE [auth 2],
OF [auth 2],
OQ [auth S2],
PD [auth 2],
PE [auth 2],
PF [auth 2],
PQ [auth S2],
QD [auth 2],
QE [auth 2],
QF [auth 2],
QQ [auth S2],
RD [auth 2],
RE [auth 2],
RF [auth 2],
RQ [auth S2],
SC [auth p],
SD [auth 2],
SE [auth 2],
SF [auth 2],
SQ [auth S2],
TD [auth 2],
TE [auth 2],
TF [auth 2],
TQ [auth S2],
UD [auth 2],
UE [auth 2],
UF [auth 2],
UQ [auth S2],
VC [auth 2],
VD [auth 2],
VE [auth 2],
VQ [auth S2],
WC [auth 2],
WD [auth 2],
WE [auth 2],
WQ [auth S2],
WU [auth TA],
XC [auth 2],
XD [auth 2],
XE [auth 2],
XQ [auth S2],
YC [auth 2],
YD [auth 2],
YE [auth 2],
YQ [auth S2],
YU [auth UA],
ZC [auth 2],
ZD [auth 2],
ZE [auth 2],
ZQ [auth S2],
ZU [auth XA]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
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AG [auth 2]
AH [auth 2]
AI [auth 2]
AJ [auth 2]
AK [auth 2]
AG [auth 2],
AH [auth 2],
AI [auth 2],
AJ [auth 2],
AK [auth 2],
AL [auth 2],
AM [auth 2],
AN [auth 2],
AO [auth 2],
AP [auth 2],
AQ [auth 5],
AS [auth S2],
AT [auth S2],
AU [auth S2],
BG [auth 2],
BH [auth 2],
BI [auth 2],
BJ [auth 2],
BK [auth 2],
BL [auth 2],
BM [auth 2],
BN [auth 2],
BO [auth 2],
BP [auth 2],
BQ [auth 5],
BS [auth S2],
BT [auth S2],
BU [auth S2],
CG [auth 2],
CH [auth 2],
CI [auth 2],
CJ [auth 2],
CK [auth 2],
CL [auth 2],
CM [auth 2],
CN [auth 2],
CO [auth 2],
CP [auth 2],
CQ [auth 5],
CS [auth S2],
CT [auth S2],
CU [auth S2],
CV [auth FA],
DG [auth 2],
DH [auth 2],
DI [auth 2],
DJ [auth 2],
DK [auth 2],
DL [auth 2],
DM [auth 2],
DN [auth 2],
DO [auth 2],
DP [auth 2],
DS [auth S2],
DT [auth S2],
DU [auth S2],
EG [auth 2],
EH [auth 2],
EI [auth 2],
EJ [auth 2],
EK [auth 2],
EL [auth 2],
EM [auth 2],
EN [auth 2],
EO [auth 2],
EP [auth 2],
ES [auth S2],
ET [auth S2],
EU [auth S2],
FC [auth E],
FG [auth 2],
FH [auth 2],
FI [auth 2],
FJ [auth 2],
FK [auth 2],
FL [auth 2],
FM [auth 2],
FN [auth 2],
FO [auth 2],
FP [auth 2],
FS [auth S2],
FT [auth S2],
FU [auth S2],
GC [auth I],
GG [auth 2],
GH [auth 2],
GI [auth 2],
GJ [auth 2],
GK [auth 2],
GL [auth 2],
GM [auth 2],
GN [auth 2],
GO [auth 2],
GP [auth 2],
GS [auth S2],
GT [auth S2],
GU [auth S2],
HG [auth 2],
HH [auth 2],
HI [auth 2],
HJ [auth 2],
HK [auth 2],
HL [auth 2],
HM [auth 2],
HN [auth 2],
HO [auth 2],
HP [auth 2],
HQ [auth 8],
HS [auth S2],
HT [auth S2],
HU [auth S2],
IC [auth L],
IG [auth 2],
IH [auth 2],
II [auth 2],
IJ [auth 2],
IK [auth 2],
IL [auth 2],
IM [auth 2],
IN [auth 2],
IO [auth 2],
IP [auth 2],
IQ [auth 8],
IS [auth S2],
IT [auth S2],
IU [auth S2],
JG [auth 2],
JH [auth 2],
JI [auth 2],
JJ [auth 2],
JK [auth 2],
JL [auth 2],
JM [auth 2],
JN [auth 2],
JO [auth 2],
JP [auth 2],
JQ [auth 8],
JS [auth S2],
JT [auth S2],
JU [auth S2],
KG [auth 2],
KH [auth 2],
KI [auth 2],
KJ [auth 2],
KK [auth 2],
KL [auth 2],
KM [auth 2],
KN [auth 2],
KO [auth 2],
KP [auth 2],
KQ [auth 8],
KS [auth S2],
KT [auth S2],
KU [auth S2],
LC [auth N],
LG [auth 2],
LH [auth 2],
LI [auth 2],
LJ [auth 2],
LK [auth 2],
LL [auth 2],
LM [auth 2],
LN [auth 2],
LO [auth 2],
LP [auth 2],
LQ [auth 8],
LS [auth S2],
LT [auth S2],
LU [auth S2],
MC [auth R],
MG [auth 2],
MH [auth 2],
MI [auth 2],
MJ [auth 2],
MK [auth 2],
ML [auth 2],
MM [auth 2],
MN [auth 2],
MO [auth 2],
MP [auth 2],
MS [auth S2],
MT [auth S2],
MU [auth S2],
NC [auth X],
NG [auth 2],
NH [auth 2],
NI [auth 2],
NJ [auth 2],
NK [auth 2],
NL [auth 2],
NM [auth 2],
NN [auth 2],
NO [auth 2],
NP [auth 2],
NR [auth S2],
NS [auth S2],
NT [auth S2],
NU [auth S2],
OG [auth 2],
OH [auth 2],
OI [auth 2],
OJ [auth 2],
OK [auth 2],
OL [auth 2],
OM [auth 2],
ON [auth 2],
OO [auth 2],
OP [auth 2],
OR [auth S2],
OS [auth S2],
OT [auth S2],
OU [auth S2],
PC [auth l],
PG [auth 2],
PH [auth 2],
PI [auth 2],
PJ [auth 2],
PK [auth 2],
PL [auth 2],
PM [auth 2],
PN [auth 2],
PO [auth 2],
PP [auth 2],
PR [auth S2],
PS [auth S2],
PT [auth S2],
PU [auth S2],
QG [auth 2],
QH [auth 2],
QI [auth 2],
QJ [auth 2],
QK [auth 2],
QL [auth 2],
QM [auth 2],
QN [auth 2],
QO [auth 2],
QP [auth 2],
QR [auth S2],
QS [auth S2],
QT [auth S2],
QU [auth S2],
RG [auth 2],
RH [auth 2],
RI [auth 2],
RJ [auth 2],
RK [auth 2],
RL [auth 2],
RM [auth 2],
RN [auth 2],
RO [auth 2],
RP [auth 2],
RR [auth S2],
RS [auth S2],
RT [auth S2],
RU [auth S2],
SG [auth 2],
SH [auth 2],
SI [auth 2],
SJ [auth 2],
SK [auth 2],
SL [auth 2],
SM [auth 2],
SN [auth 2],
SO [auth 2],
SP [auth 2],
SR [auth S2],
SS [auth S2],
ST [auth S2],
SU [auth S2],
TG [auth 2],
TH [auth 2],
TI [auth 2],
TJ [auth 2],
TK [auth 2],
TL [auth 2],
TM [auth 2],
TN [auth 2],
TO [auth 2],
TP [auth 2],
TR [auth S2],
TS [auth S2],
TT [auth S2],
TU [auth S2],
UG [auth 2],
UH [auth 2],
UI [auth 2],
UJ [auth 2],
UK [auth 2],
UL [auth 2],
UM [auth 2],
UN [auth 2],
UO [auth 2],
UP [auth 2],
UR [auth S2],
US [auth S2],
UT [auth S2],
UU [auth S2],
VG [auth 2],
VH [auth 2],
VI [auth 2],
VJ [auth 2],
VK [auth 2],
VL [auth 2],
VM [auth 2],
VN [auth 2],
VO [auth 2],
VP [auth 2],
VR [auth S2],
VS [auth S2],
VT [auth S2],
WG [auth 2],
WH [auth 2],
WI [auth 2],
WJ [auth 2],
WK [auth 2],
WL [auth 2],
WM [auth 2],
WN [auth 2],
WO [auth 2],
WP [auth 2],
WR [auth S2],
WS [auth S2],
WT [auth S2],
XG [auth 2],
XH [auth 2],
XI [auth 2],
XJ [auth 2],
XK [auth 2],
XL [auth 2],
XM [auth 2],
XN [auth 2],
XO [auth 2],
XP [auth 2],
XR [auth S2],
XS [auth S2],
XT [auth S2],
XU [auth TA],
YG [auth 2],
YH [auth 2],
YI [auth 2],
YJ [auth 2],
YK [auth 2],
YL [auth 2],
YM [auth 2],
YN [auth 2],
YO [auth 2],
YP [auth 5],
YR [auth S2],
YS [auth S2],
YT [auth S2],
ZF [auth 2],
ZG [auth 2],
ZH [auth 2],
ZI [auth 2],
ZJ [auth 2],
ZK [auth 2],
ZL [auth 2],
ZM [auth 2],
ZN [auth 2],
ZO [auth 2],
ZP [auth 5],
ZR [auth S2],
ZS [auth S2],
ZT [auth S2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
HIC
Query on HIC		C [auth E]L-PEPTIDE LINKINGC7 H11 N3 O2HIS
THC
Query on THC		OA [auth r]L-PEPTIDE LINKINGC6 H11 N O4THR
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.38 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Swedish Research CouncilEuropean UnionNT_2015-04107
European Research Council (ERC)European UnionERC-2018-StG-805230
Knut and Alice Wallenberg FoundationEuropean Union2018.0080
European Molecular Biology Organization (EMBO)European UnionH2020-MSCA-IF-2017

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-03
    Type: Initial release
  • Version 2.0: 2023-11-15
    Changes: Atomic model, Data collection, Database references
  • Version 2.1: 2024-04-24
    Changes: Data collection