7QGQ

Extended H/L (SLPH/SLPL) complex from C. difficile (CD630 strain) fit into R20291 S-layer negative stain map


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure and assembly of the S-layer in C. difficile.

Lanzoni-Mangutchi, P.Banerji, O.Wilson, J.Barwinska-Sendra, A.Kirk, J.A.Vaz, F.O'Beirne, S.Basle, A.El Omari, K.Wagner, A.Fairweather, N.F.Douce, G.R.Bullough, P.A.Fagan, R.P.Salgado, P.S.

(2022) Nat Commun 13: 970-970

  • DOI: https://doi.org/10.1038/s41467-022-28196-w
  • Primary Citation of Related Structures:  
    7ACV, 7ACW, 7ACX, 7ACY, 7ACZ, 7QGQ

  • PubMed Abstract: 

    Many bacteria and archaea possess a two-dimensional protein array, or S-layer, that covers the cell surface and plays crucial roles in cell physiology. Here, we report the crystal structure of SlpA, the main S-layer protein of the bacterial pathogen Clostridioides difficile, and use electron microscopy to study S-layer organisation and assembly. The SlpA crystal lattice mimics S-layer assembly in the cell, through tiling of triangular prisms above the cell wall, interlocked by distinct ridges facing the environment. Strikingly, the array is very compact, with pores of only ~10 Å in diameter, compared to other S-layers (30-100 Å). The surface-exposed flexible ridges are partially dispensable for overall structure and assembly, although a mutant lacking this region becomes susceptible to lysozyme, an important molecule in host defence. Thus, our work gives insights into S-layer organisation and provides a basis for development of C. difficile-specific therapeutics.


  • Organizational Affiliation

    Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Precursor of the S-layer proteins373Clostridioides difficile 630Mutation(s): 0 
UniProt
Find proteins for Q183M8 (Clostridioides difficile (strain 630))
Explore Q183M8 
Go to UniProtKB:  Q183M8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ183M8
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Precursor of the S-layer proteins318Clostridioides difficile 630Mutation(s): 0 
UniProt
Find proteins for Q183M8 (Clostridioides difficile (strain 630))
Explore Q183M8 
Go to UniProtKB:  Q183M8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ183M8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 321α = 90
b = 261β = 90
c = 345.312γ = 90

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom204877/Z/16/Z

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-06
    Type: Initial release