7Q4H

A thermostable lipase from Thermoanaerobacter thermohydrosulfuricus in complex with PMSF

PDB DOI: https://doi.org/10.2210/pdb7Q4H/pdb

Classification: HYDROLASE
Organism(s): Thermoanaerobacter thermohydrosulfuricus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-10-30 Released: 2023-05-10
Deposition Author(s): Pinotsis, N., Wilmanns, M.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.228
R-Value Work: 0.184
R-Value Observed: 0.186

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

A thermostable lipase from Thermoanaerobacter thermohydrosulfuricus in complex with PMSF

Pinotsis, N., Wilmanns, M.

To be published.

Macromolecule Content

Total Structure Weight: 60 kDa
Atom Count: 4,326
Modelled Residue Count: 518
Deposited Residue Count: 518
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hydrolase_4 domain-containing protein	A	259	Thermoanaerobacter thermohydrosulfuricus	Mutation(s): 0 Gene Names: SAMN04324257_00243
UniProt
Find proteins for A0A1G7VV58 (Thermoanaerobacter thermohydrosulfuricus) Explore A0A1G7VV58 Go to UniProtKB: A0A1G7VV58
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1G7VV58
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hydrolase_4 domain-containing protein	B	259	Thermoanaerobacter thermohydrosulfuricus	Mutation(s): 0 Gene Names: SAMN04324257_00243
UniProt
Find proteins for A0A1G7VV58 (Thermoanaerobacter thermohydrosulfuricus) Explore A0A1G7VV58 Go to UniProtKB: A0A1G7VV58
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1G7VV58
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
OLC Query on OLC Download Ideal Coordinates CCD File SDF format, chain I [auth B] MOL2 format, chain I [auth B]	I [auth B]	(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate C₂₁ H₄₀ O₄ RZRNAYUHWVFMIP-GDCKJWNLSA-N		Interactions Focus chain I [auth B] Interactions & Density Focus chain I [auth B]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain K [auth B] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain K [auth B]	G [auth A], H [auth A], K [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth B] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain K [auth B]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain J [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain J [auth B]	D [auth A], E [auth A], F [auth A], J [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain J [auth B] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain J [auth B]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Modified Residues 3 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLY Query on MLY	A	L-PEPTIDE LINKING	C₈ H₁₈ N₂ O₂		LYS
MLZ Query on MLZ	A	L-PEPTIDE LINKING	C₇ H₁₆ N₂ O₂		LYS
SEB Query on SEB	A	L-PEPTIDE LINKING	C₁₀ H₁₃ N O₅ S		SER