7PI3

PfCyRPA bound to Fab fragments from monoclonal antibodies Cy.003, Cy.004 and Cy.007


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.27 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.285 
  • R-Value Observed: 0.285 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Heterotypic interactions drive antibody synergy against a malaria vaccine candidate.

Ragotte, R.J.Pulido, D.Lias, A.M.Quinkert, D.Alanine, D.G.W.Jamwal, A.Davies, H.Nacer, A.Lowe, E.D.Grime, G.W.Illingworth, J.J.Donat, R.F.Garman, E.F.Bowyer, P.W.Higgins, M.K.Draper, S.J.

(2022) Nat Commun 13: 933-933

  • DOI: https://doi.org/10.1038/s41467-022-28601-4
  • Primary Citation of Related Structures:  
    7PHU, 7PHV, 7PHW, 7PI2, 7PI3, 7PI7

  • PubMed Abstract: 

    Understanding mechanisms of antibody synergy is important for vaccine design and antibody cocktail development. Examples of synergy between antibodies are well-documented, but the mechanisms underlying these relationships often remain poorly understood. The leading blood-stage malaria vaccine candidate, CyRPA, is essential for invasion of Plasmodium falciparum into human erythrocytes. Here we present a panel of anti-CyRPA monoclonal antibodies that strongly inhibit parasite growth in in vitro assays. Structural studies show that growth-inhibitory antibodies bind epitopes on a single face of CyRPA. We also show that pairs of non-competing inhibitory antibodies have strongly synergistic growth-inhibitory activity. These antibodies bind to neighbouring epitopes on CyRPA and form lateral, heterotypic interactions which slow antibody dissociation. We predict that such heterotypic interactions will be a feature of many immune responses. Immunogens which elicit such synergistic antibody mixtures could increase the potency of vaccine-elicited responses to provide robust and long-lived immunity against challenging disease targets.


  • Organizational Affiliation

    Department of Biochemistry, University of Oxford, Oxford, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cysteine-rich protective antigen
A, H, O, V
343Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: CyRPApfd1130wPF3D7_0423800
UniProt
Find proteins for Q8IFM8 (Plasmodium falciparum (isolate 3D7))
Explore Q8IFM8 
Go to UniProtKB:  Q8IFM8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IFM8
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Monoclonal antibody Cy.003 heavy chain
B, I, P, W
230Gallus gallusMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Monoclonal antibody Cy.003 light chain
C, J, Q, X
210Gallus gallusMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Monoclonal antibody Cy.007 heavy chain
D, K, R, Y
230Gallus gallusMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Monoclonal antibody Cy.007 light chain
E, L, S, Z
209Gallus gallusMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Monoclonal antibody Cy.004 heavy chainAA [auth a],
F,
M,
T
321Gallus gallusMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Monoclonal antibody Cy.004 light chainBA [auth b],
G,
N,
U
209Gallus gallusMutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.27 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.285 
  • R-Value Observed: 0.285 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 164.842α = 90
b = 164.842β = 90
c = 382.311γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2022-02-09
    Type: Initial release
  • Version 1.1: 2022-08-24
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description