7OI9

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

A distinct assembly pathway of the human 39S late pre-mitoribosome.

Cheng, J., Berninghausen, O., Beckmann, R.

(2021) Nat Commun 12: 4544-4544

  • DOI: https://doi.org/10.1038/s41467-021-24818-x
  • Primary Citation of Related Structures:  
    7OI6, 7OI7, 7OI8, 7OI9, 7OIA, 7OIB, 7OIC, 7OID, 7OIE

  • PubMed Abstract: 

    • Assembly of the mitoribosome is largely enigmatic and involves numerous assembly factors. Little is known about their function and the architectural transitions of the pre-ribosomal intermediates. Here, we solve cryo-EM structures of the human 39S large subunit pre-ribosomes, representing five distinct late states ...

    Assembly of the mitoribosome is largely enigmatic and involves numerous assembly factors. Little is known about their function and the architectural transitions of the pre-ribosomal intermediates. Here, we solve cryo-EM structures of the human 39S large subunit pre-ribosomes, representing five distinct late states. Besides the MALSU1 complex used as bait for affinity purification, we identify several assembly factors, including the DDX28 helicase, MRM3, GTPBP10 and the NSUN4-mTERF4 complex, all of which keep the 16S rRNA in immature conformations. The late transitions mainly involve rRNA domains IV and V, which form the central protuberance, the intersubunit side and the peptidyltransferase center of the 39S subunit. Unexpectedly, we find deacylated tRNA in the ribosomal E-site, suggesting a role in 39S assembly. Taken together, our study provides an architectural inventory of the distinct late assembly phase of the human 39S mitoribosome.

    Organizational Affiliation: 

    Gene Center and Department for Biochemistry, LMU Munich, München, Germany. beckmann@genzentrum.lmu.de.



Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L2, mitochondrialA [auth D]305Homo sapiensMutation(s): 0 
Gene Names: MRPL2, CGI-22
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T653 (Homo sapiens)
Explore Q5T653 
Go to UniProtKB:  Q5T653
PHAROS:  Q5T653
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5T653
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L3, mitochondrialB [auth E]348Homo sapiensMutation(s): 0 
Gene Names: MRPL3, MRL3, RPML3
UniProt & NIH Common Fund Data Resources
Find proteins for P09001 (Homo sapiens)
Explore P09001 
Go to UniProtKB:  P09001
PHAROS:  P09001
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09001
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L4, mitochondrialC [auth F]311Homo sapiensMutation(s): 0 
Gene Names: MRPL4, CDABP0091, CGI-28
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD3 (Homo sapiens)
Explore Q9BYD3 
Go to UniProtKB:  Q9BYD3
PHAROS:  Q9BYD3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYD3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L9, mitochondrialD [auth H]267Homo sapiensMutation(s): 0 
Gene Names: MRPL9
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD2 (Homo sapiens)
Explore Q9BYD2 
Go to UniProtKB:  Q9BYD2
PHAROS:  Q9BYD2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYD2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L10, mitochondrialE [auth I]261Homo sapiensMutation(s): 0 
Gene Names: MRPL10, MRPL8, RPML8
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z7H8 (Homo sapiens)
Explore Q7Z7H8 
Go to UniProtKB:  Q7Z7H8
PHAROS:  Q7Z7H8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z7H8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L11, mitochondrialF [auth J]192Homo sapiensMutation(s): 0 
Gene Names: MRPL11, CGI-113
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3B7 (Homo sapiens)
Explore Q9Y3B7 
Go to UniProtKB:  Q9Y3B7
PHAROS:  Q9Y3B7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y3B7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L13, mitochondrialG [auth K]178Homo sapiensMutation(s): 0 
Gene Names: MRPL13
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD1 (Homo sapiens)
Explore Q9BYD1 
Go to UniProtKB:  Q9BYD1
PHAROS:  Q9BYD1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYD1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L14, mitochondrialH [auth L]145Homo sapiensMutation(s): 0 
Gene Names: MRPL14, MRPL32, RPML32
UniProt & NIH Common Fund Data Resources
Find proteins for Q6P1L8 (Homo sapiens)
Explore Q6P1L8 
Go to UniProtKB:  Q6P1L8
PHAROS:  Q6P1L8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6P1L8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L15, mitochondrialI [auth M]296Homo sapiensMutation(s): 0 
Gene Names: MRPL15, HSPC145
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P015 (Homo sapiens)
Explore Q9P015 
Go to UniProtKB:  Q9P015
PHAROS:  Q9P015
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P015
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L16, mitochondrialJ [auth N]251Homo sapiensMutation(s): 0 
Gene Names: MRPL16, PNAS-111
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NX20 (Homo sapiens)
Explore Q9NX20 
Go to UniProtKB:  Q9NX20
PHAROS:  Q9NX20
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NX20
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L17, mitochondrialK [auth O]175Homo sapiensMutation(s): 0 
Gene Names: MRPL17, LIP2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NRX2 (Homo sapiens)
Explore Q9NRX2 
Go to UniProtKB:  Q9NRX2
PHAROS:  Q9NRX2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NRX2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L18, mitochondrialL [auth P]180Homo sapiensMutation(s): 0 
Gene Names: MRPL18, HSPC071
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H0U6 (Homo sapiens)
Explore Q9H0U6 
Go to UniProtKB:  Q9H0U6
PHAROS:  Q9H0U6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H0U6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L19, mitochondrialM [auth Q]292Homo sapiensMutation(s): 0 
Gene Names: MRPL19, KIAA0104, MRPL15
UniProt & NIH Common Fund Data Resources
Find proteins for P49406 (Homo sapiens)
Explore P49406 
Go to UniProtKB:  P49406
PHAROS:  P49406
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP49406
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L20, mitochondrialN [auth R]149Homo sapiensMutation(s): 0 
Gene Names: MRPL20
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYC9 (Homo sapiens)
Explore Q9BYC9 
Go to UniProtKB:  Q9BYC9
PHAROS:  Q9BYC9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYC9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L21, mitochondrialO [auth S]205Homo sapiensMutation(s): 0 
Gene Names: MRPL21
UniProt
Find proteins for Q7Z2W9 (Homo sapiens)
Explore Q7Z2W9 
Go to UniProtKB:  Q7Z2W9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z2W9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L22, mitochondrialP [auth T]206Homo sapiensMutation(s): 0 
Gene Names: MRPL22, MRPL25, RPML25, HSPC158
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NWU5 (Homo sapiens)
Explore Q9NWU5 
Go to UniProtKB:  Q9NWU5
PHAROS:  Q9NWU5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NWU5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L23, mitochondrialQ [auth U]153Homo sapiensMutation(s): 0 
Gene Names: MRPL23, L23MRP, RPL23L
UniProt & NIH Common Fund Data Resources
Find proteins for Q16540 (Homo sapiens)
Explore Q16540 
Go to UniProtKB:  Q16540
PHAROS:  Q16540
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16540
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L24, mitochondrialR [auth V]216Homo sapiensMutation(s): 0 
Gene Names: MRPL24
UniProt & NIH Common Fund Data Resources
Find proteins for Q96A35 (Homo sapiens)
Explore Q96A35 
Go to UniProtKB:  Q96A35
PHAROS:  Q96A35
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96A35
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L27, mitochondrialS [auth W]148Homo sapiensMutation(s): 0 
Gene Names: MRPL27, HSPC250
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0M9 (Homo sapiens)
Explore Q9P0M9 
Go to UniProtKB:  Q9P0M9
PHAROS:  Q9P0M9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P0M9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L28, mitochondrialT [auth X]256Homo sapiensMutation(s): 0 
Gene Names: MRPL28, MAAT1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13084 (Homo sapiens)
Explore Q13084 
Go to UniProtKB:  Q13084
PHAROS:  Q13084
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13084
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L47, mitochondrialU [auth Y]250Homo sapiensMutation(s): 0 
Gene Names: MRPL47, NCM1, CGI-204
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HD33 (Homo sapiens)
Explore Q9HD33 
Go to UniProtKB:  Q9HD33
PHAROS:  Q9HD33
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HD33
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L30, mitochondrialV [auth Z]161Homo sapiensMutation(s): 0 
Gene Names: MRPL30, MRPL28, RPML28, HSPC249
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TCC3 (Homo sapiens)
Explore Q8TCC3 
Go to UniProtKB:  Q8TCC3
PHAROS:  Q8TCC3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TCC3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L32, mitochondrialW [auth 0]188Homo sapiensMutation(s): 0 
Gene Names: MRPL32, HSPC283
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYC8 (Homo sapiens)
Explore Q9BYC8 
Go to UniProtKB:  Q9BYC8
PHAROS:  Q9BYC8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYC8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L33, mitochondrialX [auth 1]65Homo sapiensMutation(s): 0 
Gene Names: MRPL33, C2orf1
UniProt & NIH Common Fund Data Resources
Find proteins for O75394 (Homo sapiens)
Explore O75394 
Go to UniProtKB:  O75394
PHAROS:  O75394
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75394
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L34, mitochondrialY [auth 2]92Homo sapiensMutation(s): 0 
Gene Names: MRPL34
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BQ48 (Homo sapiens)
Explore Q9BQ48 
Go to UniProtKB:  Q9BQ48
PHAROS:  Q9BQ48
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BQ48
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L35, mitochondrialZ [auth 3]188Homo sapiensMutation(s): 0 
Gene Names: MRPL35, BM-007
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZE8 (Homo sapiens)
Explore Q9NZE8 
Go to UniProtKB:  Q9NZE8
PHAROS:  Q9NZE8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NZE8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L37, mitochondrialAA [auth 5]423Homo sapiensMutation(s): 0 
Gene Names: MRPL37, MRPL2, RPML2, HSPC235
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BZE1 (Homo sapiens)
Explore Q9BZE1 
Go to UniProtKB:  Q9BZE1
PHAROS:  Q9BZE1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BZE1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L38, mitochondrialBA [auth 6]380Homo sapiensMutation(s): 0 
Gene Names: MRPL38, HSPC262
UniProt
Find proteins for Q96DV4 (Homo sapiens)
Explore Q96DV4 
Go to UniProtKB:  Q96DV4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96DV4
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L39, mitochondrialCA [auth 7]338Homo sapiensMutation(s): 0 
Gene Names: MRPL39, C21orf92, MRPL5, RPML5, MSTP003, PRED22
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NYK5 (Homo sapiens)
Explore Q9NYK5 
Go to UniProtKB:  Q9NYK5
PHAROS:  Q9NYK5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NYK5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L40, mitochondrialDA [auth 8]206Homo sapiensMutation(s): 0 
Gene Names: MRPL40, NLVCF, URIM
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NQ50 (Homo sapiens)
Explore Q9NQ50 
Go to UniProtKB:  Q9NQ50
PHAROS:  Q9NQ50
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NQ50
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L41, mitochondrialEA [auth 9]137Homo sapiensMutation(s): 0 
Gene Names: MRPL41, BMRP, MRPL27, RPML27, PIG3
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IXM3 (Homo sapiens)
Explore Q8IXM3 
Go to UniProtKB:  Q8IXM3
PHAROS:  Q8IXM3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IXM3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L42, mitochondrialFA [auth a]142Homo sapiensMutation(s): 0 
Gene Names: MRPL42, MRPL31, MRPS32, RPML31, HSPC204, PTD007
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6G3 (Homo sapiens)
Explore Q9Y6G3 
Go to UniProtKB:  Q9Y6G3
PHAROS:  Q9Y6G3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y6G3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L43, mitochondrialGA [auth b]215Homo sapiensMutation(s): 0 
Gene Names: MRPL43
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N983 (Homo sapiens)
Explore Q8N983 
Go to UniProtKB:  Q8N983
PHAROS:  Q8N983
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N983
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L44, mitochondrialHA [auth c]332Homo sapiensMutation(s): 0 
Gene Names: MRPL44
EC: 3.1.26
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H9J2 (Homo sapiens)
Explore Q9H9J2 
Go to UniProtKB:  Q9H9J2
PHAROS:  Q9H9J2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H9J2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L45, mitochondrialIA [auth d]306Homo sapiensMutation(s): 0 
Gene Names: MRPL45
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BRJ2 (Homo sapiens)
Explore Q9BRJ2 
Go to UniProtKB:  Q9BRJ2
PHAROS:  Q9BRJ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BRJ2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L46, mitochondrialJA [auth e]279Homo sapiensMutation(s): 0 
Gene Names: MRPL46, C15orf4, LIECG2
UniProt
Find proteins for Q9H2W6 (Homo sapiens)
Explore Q9H2W6 
Go to UniProtKB:  Q9H2W6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H2W6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L48, mitochondrialKA [auth f]212Homo sapiensMutation(s): 0 
Gene Names: MRPL48, CGI-118, HSPC290
UniProt & NIH Common Fund Data Resources
Find proteins for Q96GC5 (Homo sapiens)
Explore Q96GC5 
Go to UniProtKB:  Q96GC5
PHAROS:  Q96GC5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96GC5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L49, mitochondrialLA [auth g]166Homo sapiensMutation(s): 0 
Gene Names: MRPL49, C11orf4, NOF1, OK/SW-cl.67
UniProt & NIH Common Fund Data Resources
Find proteins for Q13405 (Homo sapiens)
Explore Q13405 
Go to UniProtKB:  Q13405
PHAROS:  Q13405
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13405
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L50, mitochondrialMA [auth h]158Homo sapiensMutation(s): 0 
Gene Names: MRPL50
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N5N7 (Homo sapiens)
Explore Q8N5N7 
Go to UniProtKB:  Q8N5N7
PHAROS:  Q8N5N7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N5N7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L51, mitochondrialNA [auth i]128Homo sapiensMutation(s): 0 
Gene Names: MRPL51, MRP64, CDA09, HSPC241
UniProt & NIH Common Fund Data Resources
Find proteins for Q4U2R6 (Homo sapiens)
Explore Q4U2R6 
Go to UniProtKB:  Q4U2R6
PHAROS:  Q4U2R6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4U2R6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L52, mitochondrialOA [auth j]123Homo sapiensMutation(s): 0 
Gene Names: MRPL52
UniProt & NIH Common Fund Data Resources
Find proteins for Q86TS9 (Homo sapiens)
Explore Q86TS9 
Go to UniProtKB:  Q86TS9
PHAROS:  Q86TS9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86TS9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L53, mitochondrialPA [auth k]112Homo sapiensMutation(s): 0 
Gene Names: MRPL53
UniProt
Find proteins for Q96EL3 (Homo sapiens)
Explore Q96EL3 
Go to UniProtKB:  Q96EL3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96EL3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L54, mitochondrialQA [auth l]138Homo sapiensMutation(s): 0 
Gene Names: MRPL54
UniProt & NIH Common Fund Data Resources
Find proteins for Q6P161 (Homo sapiens)
Explore Q6P161 
Go to UniProtKB:  Q6P161
PHAROS:  Q6P161
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6P161
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein L55, mitochondrialRA [auth m]128Homo sapiensMutation(s): 0 
Gene Names: MRPL55, UNQ5835/PRO19675
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z7F7 (Homo sapiens)
Explore Q7Z7F7 
Go to UniProtKB:  Q7Z7F7
PHAROS:  Q7Z7F7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z7F7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal protein 63, mitochondrialSA [auth o]102Homo sapiensMutation(s): 0 
Gene Names: MRPL57, MRP63
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BQC6 (Homo sapiens)
Explore Q9BQC6 
Go to UniProtKB:  Q9BQC6
PHAROS:  Q9BQC6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BQC6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
Peptidyl-tRNA hydrolase ICT1, mitochondrialTA [auth p]206Homo sapiensMutation(s): 0 
Gene Names: MRPL58, DS1, ICT1
EC: 3.1.1.29
UniProt & NIH Common Fund Data Resources
Find proteins for Q14197 (Homo sapiens)
Explore Q14197 
Go to UniProtKB:  Q14197
PHAROS:  Q14197
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14197
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
Growth arrest and DNA damage-inducible proteins-interacting protein 1UA [auth q]222Homo sapiensMutation(s): 0 
Gene Names: GADD45GIP1, MRPL59, PLINP1, PRG6
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TAE8 (Homo sapiens)
Explore Q8TAE8 
Go to UniProtKB:  Q8TAE8
PHAROS:  Q8TAE8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TAE8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein S18a, mitochondrialVA [auth r]196Homo sapiensMutation(s): 0 
Gene Names: MRPS18A
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NVS2 (Homo sapiens)
Explore Q9NVS2 
Go to UniProtKB:  Q9NVS2
PHAROS:  Q9NVS2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NVS2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
39S ribosomal protein S30, mitochondrialWA [auth s]439Homo sapiensMutation(s): 0 
Gene Names: MRPS30, PDCD9, BM-047
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NP92 (Homo sapiens)
Explore Q9NP92 
Go to UniProtKB:  Q9NP92
PHAROS:  Q9NP92
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NP92
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial assembly of ribosomal large subunit protein 1XA [auth u]234Homo sapiensMutation(s): 0 
Gene Names: MALSU1, C7orf30
UniProt & NIH Common Fund Data Resources
Find proteins for Q96EH3 (Homo sapiens)
Explore Q96EH3 
Go to UniProtKB:  Q96EH3
PHAROS:  Q96EH3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96EH3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
MIEF1 upstream open reading frame proteinYA [auth v]70Homo sapiensMutation(s): 0 
Gene Names: MIEF1
UniProt & NIH Common Fund Data Resources
Find proteins for L0R8F8 (Homo sapiens)
Explore L0R8F8 
Go to UniProtKB:  L0R8F8
PHAROS:  L0R8F8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL0R8F8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
Acyl carrier protein, mitochondrialZA [auth w]156Homo sapiensMutation(s): 0 
Gene Names: NDUFAB1
UniProt & NIH Common Fund Data Resources
Find proteins for O14561 (Homo sapiens)
Explore O14561 
Go to UniProtKB:  O14561
PHAROS:  O14561
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14561
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 53
MoleculeChainsLengthOrganismImage
16S rRNAAB [auth A]1,559Homo sapiens
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 54
MoleculeChainsLengthOrganismImage
mitochondrial Val tRNABB [auth B]69Homo sapiens
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PNS
Query on PNS
Download Ideal Coordinates CCD File 
GB [auth v]4'-PHOSPHOPANTETHEINE
C11 H23 N2 O7 P S
JDMUPRLRUUMCTL-VIFPVBQESA-N		 Ligand Interaction
ZN
Query on ZN
Download Ideal Coordinates CCD File 
DB [auth 0],
FB [auth r]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
MG
Query on MG
Download Ideal Coordinates CCD File 
AC [auth A],
AD [auth A],
BC [auth A],
BD [auth A],
CB [auth W],
AC [auth A],
AD [auth A],
BC [auth A],
BD [auth A],
CB [auth W],
CC [auth A],
DC [auth A],
EB [auth g],
EC [auth A],
FC [auth A],
GC [auth A],
HB [auth A],
HC [auth A],
IB [auth A],
IC [auth A],
JB [auth A],
JC [auth A],
KB [auth A],
KC [auth A],
LB [auth A],
LC [auth A],
MB [auth A],
MC [auth A],
NB [auth A],
NC [auth A],
OB [auth A],
OC [auth A],
PB [auth A],
PC [auth A],
QB [auth A],
QC [auth A],
RB [auth A],
RC [auth A],
SB [auth A],
SC [auth A],
TB [auth A],
TC [auth A],
UB [auth A],
UC [auth A],
VB [auth A],
VC [auth A],
WB [auth A],
WC [auth A],
XB [auth A],
XC [auth A],
YB [auth A],
YC [auth A],
ZB [auth A],
ZC [auth A]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-15
    Type: Initial release
  • Version 1.1: 2021-10-13
    Changes: Data collection