7OB9

Cryo-EM structure of human RNA Polymerase I in elongation state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structures of human RNA polymerase I.

Misiaszek, A.D.Girbig, M.Grotsch, H.Baudin, F.Murciano, B.Lafita, A.Muller, C.W.

(2021) Nat Struct Mol Biol 28: 997-1008

  • DOI: https://doi.org/10.1038/s41594-021-00693-4
  • Primary Citation of Related Structures:  
    7OB9, 7OBA, 7OBB

  • PubMed Abstract: 

    RNA polymerase I (Pol I) specifically synthesizes ribosomal RNA. Pol I upregulation is linked to cancer, while mutations in the Pol I machinery lead to developmental disorders. Here we report the cryo-EM structure of elongating human Pol I at 2.7 Å resolution. In the exit tunnel, we observe a double-stranded RNA helix that may support Pol I processivity. Our structure confirms that human Pol I consists of 13 subunits with only one subunit forming the Pol I stalk. Additionally, the structure of human Pol I in complex with the initiation factor RRN3 at 3.1 Å resolution reveals stalk flipping upon RRN3 binding. We also observe an inactivated state of human Pol I bound to an open DNA scaffold at 3.3 Å resolution. Lastly, the high-resolution structure of human Pol I allows mapping of disease-related mutations that can aid understanding of disease etiology.


  • Organizational Affiliation

    Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit RPA11,720Homo sapiensMutation(s): 0 
EC: 2.7.7.6
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GTEx:  ENSG00000068654 
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UniProt GroupO95602
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit RPA21,135Homo sapiensMutation(s): 0 
EC: 2.7.7.6
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PHAROS:  Q9H9Y6
GTEx:  ENSG00000125630 
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UniProt GroupQ9H9Y6
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC1346Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171453 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC1D [auth E]210Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000099817 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC2E [auth F]127Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100142 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit RPA43F [auth G]338Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105849 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC3G [auth H]150Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163882 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit RPA12H [auth I]126Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000066379 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC5I [auth J]67Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000177700 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC2J [auth K]133Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186184 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC4K [auth L]58Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000147669 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit RPA34L [auth N]510Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000117877 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit RPA49419Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137054 
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Entity ID: 14
MoleculeChains LengthOrganismImage
RNAN [auth R]29Homo sapiens
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Entity ID: 15
MoleculeChains LengthOrganismImage
DNA non-template strandO [auth S]43Homo sapiens
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Entity ID: 16
MoleculeChains LengthOrganismImage
DNA template strandP [auth T]43Homo sapiens
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.13

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-08
    Type: Initial release
  • Version 1.1: 2021-12-22
    Changes: Database references