7O7J

Crystal structure of the human HIPK3 kinase domain bound to abemaciclib


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.246 
  • R-Value Observed: 0.247 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Abemaciclib is a potent inhibitor of DYRK1A and HIP kinases involved in transcriptional regulation

Kaltheuner, I.H.Anand, K.Moecking, J.Duster, R.Wang, J.Gray, N.S.Geyer, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Homeodomain-interacting protein kinase 3A404Homo sapiensMutation(s): 0 
Gene Names: HIPK3DYRK6FIST3PKY
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H422 (Homo sapiens)
Explore Q9H422 
Go to UniProtKB:  Q9H422
PHAROS:  Q9H422
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
6ZV (Subject of Investigation/LOI)
Query on 6ZV

Download Ideal Coordinates CCD File 
B [auth A]N-{5-[(4-ethylpiperazin-1-yl)methyl]pyridin-2-yl}-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-benzimidazol-6-yl]py rimidin-2-amine
C27 H32 F2 N8
UZWDCWONPYILKI-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PTR
Query on PTR
AL-PEPTIDE LINKINGC9 H12 N O6 PTYR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.246 
  • R-Value Observed: 0.247 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.064α = 90
b = 81.064β = 90
c = 178.82γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyGE 976/9-2

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-24
    Type: Initial release