Crystal structure of lactate dehydrogenase from Selenomonas ruminantium with NADH.
Bertrand, Q., Robin, A., Girard, E., Madern, D.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
L-lactate dehydrogenase | A | 324 | Selenomonas ruminantium | Mutation(s): 0  Gene Names: ldh, ldhL EC: 1.1.1.27 | ![]() |
UniProt | |||||
Find proteins for Q9EVR0 (Selenomonas ruminantium) Explore Q9EVR0  Go to UniProtKB:  Q9EVR0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9EVR0 | ||||
Protein Feature ViewExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAD Query on NAD | B [auth A] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N | Ligand Interaction | ||
1PE Query on 1PE | J [auth A], L [auth A] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N | Ligand Interaction | ||
MLA Query on MLA | C [auth A], D [auth A] | MALONIC ACID C3 H4 O4 OFOBLEOULBTSOW-UHFFFAOYSA-N | Ligand Interaction | ||
EDO Query on EDO | F [auth A], G [auth A], H [auth A], I [auth A], M [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction | ||
BO3 Query on BO3 | E [auth A], K [auth A] | BORIC ACID B H3 O3 KGBXLFKZBHKPEV-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS | |
OCS Query on OCS | A | L-PEPTIDE LINKING | C3 H7 N O5 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 62.75 | α = 90 |
b = 104.26 | β = 90 |
c = 110.94 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Agence Nationale de la Recherche (ANR) | France | -- |