7N8G | pdb_00007n8g

Crystal structure of R20A-R22A human Galectin-7 mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 
    0.204 (Depositor), 0.200 (DCC) 
  • R-Value Work: 
    0.167 (Depositor), 0.170 (DCC) 
  • R-Value Observed: 
    0.169 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Network-based allosteric analysis of galectin-7: Key residues dictate functional communication and stability.

Pham, N.T.H.Pare, A.Letourneau, M.Fortier, M.Chatenet, D.St-Pierre, Y.Lague, P.Calmettes, C.Doucet, N.

(2026) Protein Sci 35: e70502-e70502

  • DOI: https://doi.org/10.1002/pro.70502
  • Primary Citation of Related Structures:  
    7N4O, 7N57, 7N6C, 7N8D, 7N8G, 7N96, 7RDG

  • PubMed Abstract: 

    Allosteric modulation enables precise control of protein activity but remains difficult to harness for selective inhibitor design. Traditional high-throughput screening for allosteric modulators is still costly and time-consuming, underscoring the need for predictive computational approaches. Here, we combined network and shortest-path analyses to predict interprotomer communication nodes that regulate the pro-apoptotic activity of human galectin-7 (GAL-7). We identify a minimal electrostatic network (R20-R22-D103) as a key allosteric node controlling dimer stability and signal transmission between the two distant glycan binding sites. Our predictions guided the engineering of four variants (R20A, R22A, D103A, and R20A-R22A), all of which impaired GAL-7-induced apoptosis in human T cells. Biophysical and structural analyses confirmed that disrupting the R20-D103 interaction weakens interprotomer communication and destabilizes the dimer, while compensatory edges partially restore connectivity. These results demonstrate that residue-network fingerprinting enables predictive mapping of global communication pathways and reveal R20, R22, and D103 as key allosteric determinants of GAL-7 function. The integrative framework introduced here can be extended to identify and exploit allosteric communication pathways in other homodimeric proteins, offering a generalizable strategy for rational modulator design.


  • Organizational Affiliation
    • Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Université du Québec, Laval, Québec, Canada.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Galectin-7
A, B
135Homo sapiensMutation(s): 2 
Gene Names: LGALS7PIG1LGALS7B
UniProt & NIH Common Fund Data Resources
Find proteins for P47929 (Homo sapiens)
Explore P47929 
Go to UniProtKB:  P47929
PHAROS:  P47929
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47929
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
TRS
Query on TRS

Download Ideal Coordinates CCD File 
E [auth A]2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
GOL
Query on GOL

Download Ideal Coordinates CCD File 
G [auth A],
H [auth B],
I [auth B],
J [auth B],
K [auth B]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
F [auth A]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free:  0.204 (Depositor), 0.200 (DCC) 
  • R-Value Work:  0.167 (Depositor), 0.170 (DCC) 
  • R-Value Observed: 0.169 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.24α = 90
b = 64.96β = 90
c = 72.16γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN 2016-05557
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM105978
Other governmentCanadaFRQ-S Research Scholar Senior Career Award (281993)
Other governmentCanadaFRQ-S Junior 1 (251848)
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2017-06091
Other governmentCanadaFRQ-S Doctoral Training scholarship (287239)

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-25
    Type: Initial release
  • Version 1.1: 2023-10-25
    Changes: Data collection, Refinement description
  • Version 1.2: 2026-03-04
    Changes: Database references, Structure summary