7MQ9

Cryo-EM structure of the human SSU processome, state pre-A1*

  • Classification: RIBOSOME
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2021-05-05 Released: 2021-09-22 
  • Deposition Author(s): Vanden Broeck, A., Singh, S., Klinge, S.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), European Molecular Biology Organization (EMBO)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.87 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Nucleolar maturation of the human small subunit processome.

Singh, S.Vanden Broeck, A.Miller, L.Chaker-Margot, M.Klinge, S.

(2021) Science 373: eabj5338-eabj5338

  • DOI: 10.1126/science.abj5338
  • Primary Citation of Related Structures:  
    7MQ8, 7MQ9, 7MQA, 7MQJ

  • PubMed Abstract: 
  • [Figure: see text].


    Organizational Affiliation

    Laboratory of Protein and Nucleic Acid Chemistry, The Rockefeller University, New York, NY 10065, USA.



Macromolecules

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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S18D [auth L3]116Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S4 X isoformE [auth L4]263Homo sapiensMutation(s): 0 
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Entity ID: 6
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40S ribosomal protein S5F [auth L5]204Homo sapiensMutation(s): 0 
Gene Names: RPS5
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S6G [auth L6]249Homo sapiensMutation(s): 0 
Gene Names: RPS6OK/SW-cl.2
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S7H [auth L7]194Homo sapiensMutation(s): 0 
Gene Names: RPS7
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Entity ID: 9
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40S ribosomal protein S8I [auth L8]208Homo sapiensMutation(s): 0 
Gene Names: RPS8OK/SW-cl.83
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Entity ID: 10
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40S ribosomal protein S9J [auth L9]194Homo sapiensMutation(s): 0 
Gene Names: RPS9
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Entity ID: 11
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40S ribosomal protein S12K [auth LA]132Homo sapiensMutation(s): 0 
Gene Names: RPS12
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Entity ID: 12
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40S ribosomal protein S16L [auth LC]146Homo sapiensMutation(s): 0 
Gene Names: RPS16
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Entity ID: 13
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40S ribosomal protein S11M [auth LD]158Homo sapiensMutation(s): 0 
Gene Names: RPS11
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Entity ID: 14
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40S ribosomal protein S24N [auth LF]133Homo sapiensMutation(s): 0 
Gene Names: RPS24
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Entity ID: 15
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40S ribosomal protein S28O [auth LG]69Homo sapiensMutation(s): 0 
Gene Names: RPS28
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Entity ID: 16
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WD repeat-containing protein 75P [auth LH]830Homo sapiensMutation(s): 0 
Gene Names: WDR75UTP17
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Entity ID: 17
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Nucleolar protein 11Q [auth LI]699Homo sapiensMutation(s): 0 
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Entity ID: 18
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U3 small nucleolar RNA-associated protein 15 homologR [auth LJ]518Homo sapiensMutation(s): 0 
Gene Names: UTP15
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
WD repeat-containing protein 43S [auth LK],
T [auth LL]
677Homo sapiensMutation(s): 0 
Gene Names: WDR43KIAA0007UTP5
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
U3 small nucleolar RNA-associated protein 4 homologU [auth LN]686Homo sapiensMutation(s): 0 
Gene Names: UTP4CIRH1AcPERP-EKIAA1988
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
Periodic tryptophan protein 2 homologV [auth LO]919Homo sapiensMutation(s): 0 
Gene Names: PWP2PWP2H
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
U3 small nucleolar RNA-associated protein 6 homologW [auth LP]597Homo sapiensMutation(s): 0 
Gene Names: UTP6C17orf40HCA66MHAT
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Entity ID: 23
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WD repeat-containing protein 3X [auth LQ]943Homo sapiensMutation(s): 0 
Gene Names: WDR3
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
U3 small nucleolar RNA-associated protein 18 homologY [auth LS]556Homo sapiensMutation(s): 0 
Gene Names: UTP18WDR50CDABP0061CGI-48
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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
WD repeat-containing protein 36Z [auth LT]951Homo sapiensMutation(s): 0 
Gene Names: WDR36
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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
DDB1- and CUL4-associated factor 13AA [auth LU]445Homo sapiensMutation(s): 0 
Gene Names: DCAF13WDSOF1HSPC064
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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
WD repeat-containing protein 46BA [auth LW]610Homo sapiensMutation(s): 0 
Gene Names: WDR46BING4C6orf11FP221
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
U3 small nucleolar ribonucleoprotein protein IMP3CA [auth LZ]184Homo sapiensMutation(s): 0 
Gene Names: IMP3C15orf12MRPS4
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Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
U3 small nucleolar ribonucleoprotein protein MPP10DA [auth NA]681Homo sapiensMutation(s): 0 
Gene Names: MPHOSPH10MPP10
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Entity ID: 30
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Something about silencing protein 10EA [auth NB]479Homo sapiensMutation(s): 0 
Gene Names: UTP3CRLZ1SAS10
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleolar protein 7FA [auth ND]257Homo sapiensMutation(s): 0 
Gene Names: NOL7C6orf90NOP27
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Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
Uncharacterized protein C1orf131GA [auth NE]293Homo sapiensMutation(s): 0 
Gene Names: C1orf131cPERP-A
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S13HA [auth NF]151Homo sapiensMutation(s): 0 
Gene Names: RPS13
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Entity ID: 34
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40S ribosomal protein S14IA [auth NG]151Homo sapiensMutation(s): 0 
Gene Names: RPS14PRO2640
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Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
RNA cytidine acetyltransferaseJA [auth NJ],
SB [auth NK]
1025Homo sapiensMutation(s): 0 
Gene Names: NAT10ALPKIAA1709
EC: 2.3.1
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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S3aKA [auth NM]264Homo sapiensMutation(s): 0 
Gene Names: RPS3AFTE1MFTL
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Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
Protein AATFLA [auth NN]560Homo sapiensMutation(s): 0 
Gene Names: AATFCHE1DEDHSPC277
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S15aMA [auth NO]130Homo sapiensMutation(s): 0 
Gene Names: RPS15AOK/SW-cl.82
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Entity ID: 39
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40S ribosomal protein S27NA [auth NQ]84Homo sapiensMutation(s): 0 
Gene Names: RPS27MPS1
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Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
RRP12-like proteinOA [auth NR]861Homo sapiensMutation(s): 0 
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Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aPA [auth NT]156Homo sapiensMutation(s): 0 
Gene Names: RPS27AUBA80UBCEP1
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Entity ID: 42
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40S ribosomal protein S17QA [auth NU]135Homo sapiensMutation(s): 0 
Gene Names: RPS17RPS17L
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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleolar protein 10RA [auth NW]688Homo sapiensMutation(s): 0 
Gene Names: NOL10
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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleolar protein 56SA594Homo sapiensMutation(s): 0 
Gene Names: NOP56NOL5A
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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleolar protein 58TA [auth SB]529Homo sapiensMutation(s): 0 
Gene Names: NOP58NOL5NOP5HSPC120
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Find proteins for Q9Y2X3 (Homo sapiens)
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Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
rRNA 2'-O-methyltransferase fibrillarinUA [auth SC],
VA [auth SD]
321Homo sapiensMutation(s): 0 
Gene Names: FBLFIB1FLRN
EC: 2.1.1
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Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
NHP2-like protein 1WA [auth SE],
XA [auth SF]
128Homo sapiensMutation(s): 0 
Gene Names: SNU13NHP2L1
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Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
RNA 3'-terminal phosphate cyclase-like proteinYA [auth SH]373Homo sapiensMutation(s): 0 
Gene Names: RCL1RNACRPC2RPCL1RTC2HSPC338
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Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosome biogenesis protein BMS1 homologZA [auth SI]1282Homo sapiensMutation(s): 0 
Gene Names: BMS1BMS1LKIAA0187
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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal RNA small subunit methyltransferase NEP1VB [auth SJ],
AB [auth SK]
244Homo sapiensMutation(s): 0 
Gene Names: EMG1C2F
EC: 2.1.1
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Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
rRNA-processing protein FCF1 homologBB [auth SL]198Homo sapiensMutation(s): 0 
Gene Names: FCF1C14orf111CGI-35
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Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
U3 small nucleolar ribonucleoprotein protein IMP4CB [auth SM]291Homo sapiensMutation(s): 0 
Gene Names: IMP4BXDC4
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Entity ID: 53
MoleculeChainsSequence LengthOrganismDetailsImage
Deoxynucleotidyltransferase terminal-interacting protein 2DB [auth SQ]756Homo sapiensMutation(s): 0 
Gene Names: DNTTIP2ERBPTDIF2
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Entity ID: 54
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40S ribosomal protein S23EB [auth SR]143Homo sapiensMutation(s): 0 
Gene Names: RPS23
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Entity ID: 55
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U3 small nucleolar RNA-associated protein 14 homolog AFB [auth SS]771Homo sapiensMutation(s): 0 
Gene Names: UTP14ASDCCAG16
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Entity ID: 56
MoleculeChainsSequence LengthOrganismDetailsImage
Unassigned peptidesGB [auth SX]177Homo sapiensMutation(s): 0 
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Entity ID: 57
MoleculeChainsSequence LengthOrganismDetailsImage
Probable U3 small nucleolar RNA-associated protein 11HB [auth SY]253Homo sapiensMutation(s): 0 
Gene Names: UTP11UTP11LCGI-94HDCMB12P
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Entity ID: 58
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleolar protein 6IB [auth NH]1146Homo sapiensMutation(s): 0 
Gene Names: NOL6
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Entity ID: 59
MoleculeChainsSequence LengthOrganismDetailsImage
Small subunit processome component 20 homologJB [auth SP]2785Homo sapiensMutation(s): 0 
Gene Names: UTP20DRIM
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Entity ID: 60
MoleculeChainsSequence LengthOrganismDetailsImage
Transducin beta-like protein 3KB [auth LR]808Homo sapiensMutation(s): 0 
Gene Names: TBL3SAZD
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Entity ID: 61
MoleculeChainsSequence LengthOrganismDetailsImage
HEAT repeat-containing protein 1LB [auth LM]2144Homo sapiensMutation(s): 0 
Gene Names: HEATR1BAP28UTP10
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Entity ID: 63
MoleculeChainsSequence LengthOrganismDetailsImage
U3 small nucleolar RNA-interacting protein 2NB [auth SG]475Homo sapiensMutation(s): 0 
Gene Names: RRP9RNU3IP2U355K
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Entity ID: 64
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Ribosomal RNA-processing protein 7 homolog AOB [auth NI]280Homo sapiensMutation(s): 0 
Gene Names: RRP7ACGI-96
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Entity ID: 65
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RNA-binding protein PNO1PB [auth SW]252Homo sapiensMutation(s): 0 
Gene Names: PNO1
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Entity ID: 66
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleolar protein 14QB [auth ST]632Homo sapiensMutation(s): 0 
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Entity ID: 67
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Nucleolar complex protein 4 homologRB [auth SU]472Homo sapiensMutation(s): 0 
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Entity ID: 68
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KRR1 small subunit processome component homologTB [auth NY]381Homo sapiensMutation(s): 0 
Gene Names: KRR1HRB2
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Entity ID: 69
MoleculeChainsSequence LengthOrganismDetailsImage
BystinUB [auth SZ]304Homo sapiensMutation(s): 0 
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