7LS0

Structure of the Human ALK GRD bound to AUG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.238 
  • R-Value Observed: 0.240 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structural basis for ligand reception by anaplastic lymphoma kinase

Li, T.Stayrook, S.E.Tsutsui, Y.Zhang, J.Wang, Y.Li, H.Proffitt, A.Krimmer, S.G.Ahmed, M.Belliveau, O.Walker, I.X.Mudumbi, K.C.Suzuki, Y.Lax, I.Alvarado, D.Lemmon, M.A.Schlessinger, J.Klein, D.E.

(2021) Nature 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ALK tyrosine kinase receptor fused with ALK and LTK ligand 2A, B, C, D451Homo sapiensMutation(s): 0 
Gene Names: ALKALKAL2FAM150BUNQ542/PRO1097
EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6UX46 (Homo sapiens)
Explore Q6UX46 
Go to UniProtKB:  Q6UX46
PHAROS:  Q6UX46
Find proteins for Q9UM73 (Homo sapiens)
Explore Q9UM73 
Go to UniProtKB:  Q9UM73
PHAROS:  Q9UM73
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG (Subject of Investigation/LOI)
Query on NAG

Download Ideal Coordinates CCD File 
G [auth D]2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
CIT
Query on CIT

Download Ideal Coordinates CCD File 
E [auth A], F [auth A]CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.238 
  • R-Value Observed: 0.240 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.262α = 90
b = 177.754β = 104.8
c = 94.855γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesK22 CA215821
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR01 CA248532

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-24
    Type: Initial release