7LGN

Cyanophycin synthetase 1 from T. morbirosei


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.270 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structures and function of the amino acid polymerase cyanophycin synthetase.

Sharon, I.Haque, A.S.Grogg, M.Lahiri, I.Seebach, D.Leschziner, A.E.Hilvert, D.Schmeing, T.M.

(2021) Nat Chem Biol 17: 1101-1110

  • DOI: https://doi.org/10.1038/s41589-021-00854-y
  • Primary Citation of Related Structures:  
    7LG5, 7LGJ, 7LGM, 7LGN, 7LGQ

  • PubMed Abstract: 

    Cyanophycin is a natural biopolymer produced by a wide range of bacteria, consisting of a chain of poly-L-Asp residues with L-Arg residues attached to the β-carboxylate sidechains by isopeptide bonds. Cyanophycin is synthesized from ATP, aspartic acid and arginine by a homooligomeric enzyme called cyanophycin synthetase (CphA1). CphA1 has domains that are homologous to glutathione synthetases and muramyl ligases, but no other structural information has been available. Here, we present cryo-electron microscopy and X-ray crystallography structures of cyanophycin synthetases from three different bacteria, including cocomplex structures of CphA1 with ATP and cyanophycin polymer analogs at 2.6 Å resolution. These structures reveal two distinct tetrameric architectures, show the configuration of active sites and polymer-binding regions, indicate dynamic conformational changes and afford insight into catalytic mechanism. Accompanying biochemical interrogation of substrate binding sites, catalytic centers and oligomerization interfaces combine with the structures to provide a holistic understanding of cyanophycin biosynthesis.


  • Organizational Affiliation

    Department of Biochemistry and Centre de Recherche en Biologie Structurale, McGill University, Montréal, Quebec, Canada.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyanophycin synthase
A, B
909Tatumella morbiroseiMutation(s): 0 
Gene Names: HA49_14190
EC: 6.3.2.29 (PDB Primary Data), 6.3.2.30 (PDB Primary Data)
UniProt
Find proteins for A0A095T5Z8 (Tatumella morbirosei)
Explore A0A095T5Z8 
Go to UniProtKB:  A0A095T5Z8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A095T5Z8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.326 
  • R-Value Work: 0.270 
  • Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 222.561α = 90
b = 222.561β = 90
c = 105.216γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
CRANK2phasing
PDB_EXTRACTdata extraction
DIALSdata reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-18
    Type: Initial release
  • Version 1.1: 2021-09-01
    Changes: Database references
  • Version 1.2: 2021-10-06
    Changes: Database references