7KUB | pdb_00007kub

Au1 Domain of VEGF Readthrough Element

  • Classification: RNA
  • Organism(s): Bos taurus
  • Mutation(s): No 

  • Deposited: 2020-11-24 Released: 2022-06-01 
  • Deposition Author(s): D'Souza, V.M., Wagner, N.O., Edwards, J.M.
  • Funding Organization(s): Howard Hughes Medical Institute (HHMI), National Science Foundation (NSF, United States)

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 7KUB

This is version 1.1 of the entry. See complete history. 

Literature

Stop codon readthrough in VEGF-A is regulated by complex signals

Wagner, N.O., Edwards, J.E., Abramovich, J., Gupta, P., Swaminathan, H., Rouskin, S., D'Souza, V.M.

To be published.

Macromolecule Content 

  • Total Structure Weight: 19.27 kDa 
  • Atom Count: 1,274 
  • Modeled Residue Count: 60 
  • Deposited Residue Count: 60 
  • Unique nucleic acid chains: 1

Macromolecules

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(by identity cutoff) 
Entity ID: 1
MoleculeChains LengthOrganismImage
RNA (60-MER)60Bos taurus
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States55108516
National Science Foundation (NSF, United States)United States1144152

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-01
    Type: Initial release
  • Version 1.1: 2024-05-15
    Changes: Data collection, Database references