7KM2 | pdb_00007km2

Dodecameric Structure of the Chlamydia trachomatis Flavin Prenyltransferase UbiX Ortholog CT220 with FMN

PDB DOI: https://doi.org/10.2210/pdb7KM2/pdb

Classification: TRANSFERASE
Organism(s): Chlamydia trachomatis D/UW-3/CX
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-11-02 Released: 2021-11-10
Deposition Author(s): Nguyen, T., Nicely, N.I., Belaia-Martiniouk, A., Dunne, A.P., McCafferty, D.G.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.19 Å
R-Value Free:
0.229 (Depositor), 0.230 (DCC)
R-Value Work:
0.190 (Depositor), 0.190 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Functional and structural validation of CT220 as the UbiX-like flavin prenyltransferase from Chlamydial menaquinone biosynthesis

Nguyen, T., Nicely, N.I., Belaia-Martiniouk, A., Dunne, A.P., McCafferty, D.G.

To be published.

Macromolecule Content

Total Structure Weight: 269.21 kDa
Atom Count: 17,614
Modeled Residue Count: 2,192
Deposited Residue Count: 2,400
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flavin prenyltransferase UbiX	A [auth L] B [auth I] C [auth A] D [auth B] E [auth C] A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	200	Chlamydia trachomatis D/UW-3/CX	Mutation(s): 0 Gene Names: ubiX, CT_220 EC: 2.5.1.129
UniProt
Find proteins for O84222 (Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)) Explore O84222 Go to UniProtKB: O84222
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O84222
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN (Subject of Investigation/LOI) Query on FMN Download:Ideal Coordinates CCD File SDF format, chain X [auth K] SDF format, chain W [auth J] SDF format, chain V [auth H] SDF format, chain U [auth G] SDF format, chain T [auth F] SDF format, chain S [auth E] SDF format, chain R [auth D] SDF format, chain Q [auth C] SDF format, chain P [auth B] SDF format, chain O [auth A] SDF format, chain N [auth I] SDF format, chain M [auth L] MOL2 format, chain X [auth K] MOL2 format, chain W [auth J] MOL2 format, chain V [auth H] MOL2 format, chain U [auth G] MOL2 format, chain T [auth F] MOL2 format, chain S [auth E] MOL2 format, chain R [auth D] MOL2 format, chain Q [auth C] MOL2 format, chain P [auth B] MOL2 format, chain O [auth A] MOL2 format, chain N [auth I] MOL2 format, chain M [auth L] mmCIF format, chain X [auth K] mmCIF format, chain W [auth J] mmCIF format, chain V [auth H] mmCIF format, chain U [auth G] mmCIF format, chain T [auth F] mmCIF format, chain S [auth E] mmCIF format, chain R [auth D] mmCIF format, chain Q [auth C] mmCIF format, chain P [auth B] mmCIF format, chain O [auth A] mmCIF format, chain N [auth I] mmCIF format, chain M [auth L]	M [auth L] N [auth I] O [auth A] P [auth B] Q [auth C] M [auth L], N [auth I], O [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth J], X [auth K]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain M [auth L] Focus chain N [auth I] Focus chain O [auth A] Focus chain P [auth B] Focus chain Q [auth C] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth F] Focus chain U [auth G] Focus chain V [auth H] Focus chain W [auth J] Focus chain X [auth K] Interactions & Density Focus chain M [auth L] Focus chain N [auth I] Focus chain O [auth A] Focus chain P [auth B] Focus chain Q [auth C] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth F] Focus chain U [auth G] Focus chain V [auth H] Focus chain W [auth J] Focus chain X [auth K]