7KM2 | pdb_00007km2

Dodecameric Structure of the Chlamydia trachomatis Flavin Prenyltransferase UbiX Ortholog CT220 with FMN

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth K]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
J [auth H]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
I [auth G]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
A [auth L]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth K]	Isochorismatase	e7km2K1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
K [auth J]	Isochorismatase	e7km2J1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
J [auth H]	Isochorismatase	e7km2H1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
I [auth G]	Isochorismatase	e7km2G1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
H [auth F]	Isochorismatase	e7km2F1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
G [auth E]	Isochorismatase	e7km2E1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
F [auth D]	Isochorismatase	e7km2D1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
E [auth C]	Isochorismatase	e7km2C1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
D [auth B]	Isochorismatase	e7km2B1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
C [auth A]	Isochorismatase	e7km2A1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
B [auth I]	Isochorismatase	e7km2I1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)
A [auth L]	Isochorismatase	e7km2L1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	PF02441	Flavoprotein (Flavoprotein)	Flavoprotein	This domain is found in diverse flavoprotein enzymes, including covering the whole length of the sequence of epidermin biosynthesis protein from Staphylococcus epidermidis (EpiD, Swiss:P30197), which has been shown to bind FMN [1]. This enzyme cataly ...	This domain is found in diverse flavoprotein enzymes, including covering the whole length of the sequence of epidermin biosynthesis protein from Staphylococcus epidermidis (EpiD, Swiss:P30197), which has been shown to bind FMN [1]. This enzyme catalyses the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance [2]. dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenyl-acrylic acid decarboxylase Swiss:P33751 (EC:4.1.1.-) [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	Flavin prenyltransferase UbiX	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity flavin prenyltransferase activity carboxy-lyase activity lyase activity carbon-carbon lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	IPR036551	Flavin prenyltransferase-like	Homologous Superfamily
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	IPR003382	Flavoprotein	Domain
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	IPR004507	Flavin prenyltransferase UbiX-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.