Crystal structure of GII.4 Norovirus capsid reveals inherent conformational flexibility of the capsid protein
Hu, L., Prasad, B.V.V.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein VP1 | A [auth AA], AA [auth IC], B [auth AB], BA [auth JA], C [auth AC], CA [auth JB], D [auth BA], DA [auth JC], E [auth BB], EA [auth KA], F [auth BC], FA [auth KB], G [auth CA], GA [auth KC], H [auth CB], HA [auth LA], I [auth CC], IA [auth LB], J [auth DA], JA [auth LC], K [auth DB], KA [auth MA], L [auth DC], LA [auth MB], M [auth EA], MA [auth MC], N [auth EB], NA, O [auth EC], OA [auth NB], P [auth FA], PA [auth NC], Q [auth FB], QA [auth OA], R [auth FC], RA [auth OB], S [auth GA], SA [auth OC], T [auth GB], U [auth GC], V [auth HA], W [auth HB], X [auth HC], Y [auth IA], Z [auth IB] | 540 | Norovirus Hu/Houston/TCH186/2002/US | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A9YYE4 (Norovirus Hu/Houston/TCH186/2002/US) Explore A9YYE4  Go to UniProtKB:  A9YYE4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A9YYE4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CD (Subject of Investigation/LOI) Query on CD | AD [auth MA] BC [auth GB] CB [auth BC] EB [auth CA] ED [auth MB] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N | |||
EDO Query on EDO | LC [auth JA] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | AB [auth BA] AC [auth GA] BB [auth BA] BD [auth MA] CC [auth GC] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 420.17 | α = 90 |
b = 446.597 | β = 90 |
c = 463.952 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | P01 AI057788 |