7ESA

the complex structure of flavin transferase FmnB complexed with FAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.194 

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Literature

Structural insights into the catalytic and inhibitory mechanisms of the flavin transferase FmnB in Listeria monocytogenes.

Zheng, Y.Yan, W.Dou, C.Zhou, D.Chen, Y.Jin, Y.Yang, L.Zeng, X.Cheng, W.

(2022) MedComm (2020) 3: e99-e99

  • DOI: https://doi.org/10.1002/mco2.99
  • Primary Citation of Related Structures:  
    7ESA, 7ESB, 7ESC, 7F2U, 7F39

  • PubMed Abstract: 

    Listeria monocytogenes , a food-borne Gram-positive pathogen, often causes diseases such as gastroenteritis, bacterial sepsis, and meningitis. Newly discovered extracellular electron transfer (EET) from L. monocytogenes plays critical roles in the generation of redox molecules as electron carriers in bacteria. A Mg 2+ -dependent protein flavin mononucleotide (FMN) transferase (FmnB; UniProt: LMRG_02181) in EET is responsible for the transfer of electrons from intracellular to extracellular by hydrolyzing cofactor flavin adenine dinucleotide (FAD) and transferring FMN. FmnB homologs have been investigated in Gram-negative bacteria but have been less well studied in Gram-positive bacteria. In particular, the catalytic and inhibitory mechanisms of FmnB homologs remain elusive. Here, we report a series of crystal structures of apo-FmnB and FmnB complexed with substrate FAD, three inhibitors AMP, ADP, and ATP, revealing the unusual catalytic triad center (Asp301-Ser257-His273) of FmnB. The three inhibitors indeed inhibited the activity of FmnB in varying degrees by occupying the binding site of the FAD substrate. The key residue Arg262 of FmnB was profoundly affected by ADP but not AMP or ATP. Overall, our studies not only provide insights into the promiscuous ligand recognition behavior of FmnB but also shed light on its catalytic and inhibitory mechanisms.


  • Organizational Affiliation

    Division of Respiratory and Critical Care Medicine Respiratory Infection and Intervention Laboratory of Frontiers Science Center for Disease-Related Molecular Network State Key Laboratory of Biotherapy West China Hospital of Sichuan University Chengdu China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FAD:protein FMN transferase340Listeria monocytogenes 10403SMutation(s): 0 
Gene Names: LMRG_02181
EC: 2.7.1.180
UniProt
Find proteins for A0A0H3GJF7 (Listeria monocytogenes serotype 1/2a (strain 10403S))
Explore A0A0H3GJF7 
Go to UniProtKB:  A0A0H3GJF7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3GJF7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.194 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.089α = 90
b = 67.294β = 90
c = 86.794γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
DIALSdata reduction
DIALSdata scaling
CRANK2phasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-03
    Type: Initial release
  • Version 1.1: 2022-06-08
    Changes: Database references