7EQ1

GPR114-Gs-scFv16 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for the tethered peptide activation of adhesion GPCRs.

Ping, Y.Q.Xiao, P.Yang, F.Zhao, R.J.Guo, S.C.Yan, X.Wu, X.Zhang, C.Lu, Y.Zhao, F.Zhou, F.Xi, Y.T.Yin, W.Liu, F.Z.He, D.F.Zhang, D.L.Zhu, Z.L.Jiang, Y.Du, L.Feng, S.Q.Schoneberg, T.Liebscher, I.Xu, H.E.Sun, J.P.

(2022) Nature 604: 763-770

  • DOI: https://doi.org/10.1038/s41586-022-04619-y
  • Primary Citation of Related Structures:  
    7EPT, 7EQ1

  • PubMed Abstract: 

    Adhesion G-protein-coupled receptors (aGPCRs) are important for organogenesis, neurodevelopment, reproduction and other processes 1-6 . Many aGPCRs are activated by a conserved internal (tethered) agonist sequence known as the Stachel sequence 7-12 . Here, we report the cryogenic electron microscopy (cryo-EM) structures of two aGPCRs in complex with G s : GPR133 and GPR114. The structures indicate that the Stachel sequences of both receptors assume an α-helical-bulge-β-sheet structure and insert into a binding site formed by the transmembrane domain (TMD). A hydrophobic interaction motif (HIM) within the Stachel sequence mediates most of the intramolecular interactions with the TMD. Combined with the cryo-EM structures, biochemical characterization of the HIM motif provides insight into the cross-reactivity and selectivity of the Stachel sequences. Two interconnected mechanisms, the sensing of Stachel sequences by the conserved 'toggle switch' W 6.53 and the constitution of a hydrogen-bond network formed by Q 7.49 /Y 7.49 and the P 6.47 /V 6.47 φφG 6.50 motif (φ indicates a hydrophobic residue), are important in Stachel sequence-mediated receptor activation and G s coupling. Notably, this network stabilizes kink formation in TM helices 6 and 7 (TM6 and TM7, respectively). A common G s -binding interface is observed between the two aGPCRs, and GPR114 has an extended TM7 that forms unique interactions with G s . Our structures reveal the detailed mechanisms of aGPCR activation by Stachel sequences and their G s coupling.


  • Organizational Affiliation

    Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gs protein alpha subunit361Bos taurusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P04896 (Bos taurus)
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Find proteins for P63097 (Bos taurus)
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Go to UniProtKB:  P63097
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UniProt GroupsP63097P04896
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Adhesion G-protein coupled receptor G5B [auth R]302Homo sapiensMutation(s): 0 
Gene Names: ADGRG5GPR114PGR27UNQ2524/PRO6017
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IZF4 (Homo sapiens)
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Go to UniProtKB:  Q8IZF4
PHAROS:  Q8IZF4
GTEx:  ENSG00000159618 
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UniProt GroupQ8IZF4
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
scFv16C [auth S]247synthetic constructMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2D [auth Y]71Bos taurusMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt
Find proteins for P63212 (Bos taurus)
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UniProt GroupP63212
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1E [auth B]345Rattus norvegicusMutation(s): 0 
Gene Names: Gnb1
UniProt
Find proteins for P54311 (Rattus norvegicus)
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UniProt GroupP54311
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

  • Released Date: 2022-05-11 
  • Deposition Author(s): Ping, Y.

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-11
    Type: Initial release