7DWX

Conformation 1 of S-ACE2-B0AT1 ternary complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for the different states of the spike protein of SARS-CoV-2 in complex with ACE2.

Yan, R.Zhang, Y.Li, Y.Ye, F.Guo, Y.Xia, L.Zhong, X.Chi, X.Zhou, Q.

(2021) Cell Res 31: 717-719


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Sodium-dependent neutral amino acid transporter B(0)AT1A, C654Homo sapiensMutation(s): 0 
Gene Names: SLC6A19B0AT1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q695T7 (Homo sapiens)
Explore Q695T7 
Go to UniProtKB:  Q695T7
PHAROS:  Q695T7
Entity Groups  
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UniProt GroupQ695T7
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Angiotensin-converting enzyme 2B, D817Homo sapiensMutation(s): 0 
Gene Names: ACE2UNQ868/PRO1885
EC: 3.4.17.23 (PDB Primary Data), 3.4.17 (PDB Primary Data)
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYF1 (Homo sapiens)
Explore Q9BYF1 
Go to UniProtKB:  Q9BYF1
PHAROS:  Q9BYF1
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UniProt GroupQ9BYF1
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Spike glycoprotein
E, F, G, H, I, J
E, F, G, H, I, J
1283Severe acute respiratory syndrome coronavirus 2Mutation(s): 2 
Gene Names: S2
Membrane Entity: Yes 
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTC2 
Go to UniProtKB:  P0DTC2
Entity Groups  
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UniProt GroupP0DTC2
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 4
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
AA [auth a],
AB [auth 0],
BA [auth b],
BB [auth 1],
CA [auth c],
AA [auth a],
AB [auth 0],
BA [auth b],
BB [auth 1],
CA [auth c],
CB [auth 2],
DA [auth d],
DB [auth 3],
EA [auth e],
EB [auth 4],
FA [auth f],
FB [auth 5],
GA [auth g],
GB [auth 6],
HA [auth h],
HB [auth 7],
IA [auth i],
IB [auth 8],
JA [auth j],
JB [auth 9],
K,
KA [auth k],
KB [auth AA],
L,
LA [auth l],
LB [auth BA],
M,
MA [auth m],
MB [auth CA],
N,
NA [auth n],
NB [auth DA],
O,
OA [auth o],
OB [auth EA],
P,
PA [auth p],
PB [auth FA],
Q,
QA [auth q],
R,
RA [auth r],
S,
SA [auth s],
T,
TA [auth t],
U,
UA [auth u],
V,
VA [auth v],
W,
WA [auth w],
X,
XA [auth x],
Y,
YA [auth y],
Z,
ZA [auth z]
2N-Glycosylation Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG (Subject of Investigation/LOI)
Query on NAG

Download Ideal Coordinates CCD File 
AC [auth C],
AD [auth G],
AE [auth J],
BD [auth G],
BE [auth J],
AC [auth C],
AD [auth G],
AE [auth J],
BD [auth G],
BE [auth J],
CC [auth D],
CD [auth G],
CE [auth J],
DD [auth G],
DE [auth J],
EC [auth E],
ED [auth G],
EE [auth J],
FC [auth E],
FD [auth H],
FE [auth J],
GC [auth E],
GD [auth H],
HC [auth E],
HD [auth H],
IC [auth E],
ID [auth H],
JC [auth E],
JD [auth H],
KC [auth E],
KD [auth H],
LC [auth E],
LD [auth H],
MC [auth E],
MD [auth H],
NC [auth F],
ND [auth H],
OC [auth F],
OD [auth I],
PC [auth F],
PD [auth I],
QB [auth A],
QC [auth F],
QD [auth I],
RB [auth A],
RC [auth F],
RD [auth I],
SB [auth A],
SC [auth F],
SD [auth I],
TB [auth A],
TC [auth F],
TD [auth I],
UC [auth F],
UD [auth I],
VB [auth B],
VC [auth F],
VD [auth I],
WC [auth F],
WD [auth I],
XB [auth C],
XC [auth G],
XD [auth I],
YB [auth C],
YC [auth G],
YD [auth J],
ZB [auth C],
ZC [auth G],
ZD [auth J]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
LEU
Query on LEU

Download Ideal Coordinates CCD File 
BC [auth C],
UB [auth A]
LEUCINE
C6 H13 N O2
ROHFNLRQFUQHCH-YFKPBYRVSA-N
 Ligand Interaction
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
DC [auth D],
WB [auth B]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31971123
National Natural Science Foundation of China (NSFC)China81920108015
National Natural Science Foundation of China (NSFC)China31930059

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release
  • Version 1.1: 2021-06-16
    Changes: Database references