7DA9

Structure of 6-hydroxy-3-succinoyl-pyridine 3-monooxygenase (HspB) from Pseudomonas putida S16

PDB DOI: https://doi.org/10.2210/pdb7DA9/pdb

Classification: OXIDOREDUCTASE
Organism(s): Pseudomonas putida S16
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-10-15 Released: 2021-10-20
Deposition Author(s): Liu, G.Q., Liu, G.Q.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.236
R-Value Work: 0.181
R-Value Observed: 0.183

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of 6-hydroxy-3-succinoyl-pyridine 3-monooxygenase (HspB) from Pseudomonas putida S16

Liu, G.Q., Liu, G.Q.

To be published.

Macromolecule Content

Total Structure Weight: 88.05 kDa
Atom Count: 6,591
Modelled Residue Count: 776
Deposited Residue Count: 786
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
6-hydroxy-3-succinoylpyridine 3-monooxygenase HspB	A, B	393	Pseudomonas putida S16	Mutation(s): 0 Gene Names: hspB, PPS_4061 EC: 1.14.13.163
UniProt
Find proteins for F8G0M4 (Pseudomonas putida (strain DSM 28022 / S16)) Explore F8G0M4 Go to UniProtKB: F8G0M4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F8G0M4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.236
R-Value Work: 0.181
R-Value Observed: 0.183
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.417	α = 90
b = 83.779	β = 114.95
c = 79.56	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-10-20

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2021-10-20
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.