7CW2

Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-263 (subregion around icosahedral 5-fold vertex)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of Chikungunya virus inhibition by monoclonal antibodies.

Zhou, Q.F.Fox, J.M.Earnest, J.T.Ng, T.S.Kim, A.S.Fibriansah, G.Kostyuchenko, V.A.Shi, J.Shu, B.Diamond, M.S.Lok, S.M.

(2020) Proc Natl Acad Sci U S A 117: 27637-27645

  • DOI: https://doi.org/10.1073/pnas.2008051117
  • Primary Citation of Related Structures:  
    7CVY, 7CVZ, 7CW0, 7CW2, 7CW3

  • PubMed Abstract: 

    Chikungunya virus (CHIKV) is an emerging viral pathogen that causes both acute and chronic debilitating arthritis. Here, we describe the functional and structural basis as to how two anti-CHIKV monoclonal antibodies, CHK-124 and CHK-263, potently inhibit CHIKV infection in vitro and in vivo. Our in vitro studies show that CHK-124 and CHK-263 block CHIKV at multiple stages of viral infection. CHK-124 aggregates virus particles and blocks attachment. Also, due to antibody-induced virus aggregation, fusion with endosomes and egress are inhibited. CHK-263 neutralizes CHIKV infection mainly by blocking virus attachment and fusion. To determine the structural basis of neutralization, we generated cryogenic electron microscopy reconstructions of Fab:CHIKV complexes at 4- to 5-Å resolution. CHK-124 binds to the E2 domain B and overlaps with the Mxra8 receptor-binding site. CHK-263 blocks fusion by binding an epitope that spans across E1 and E2 and locks the heterodimer together, likely preventing structural rearrangements required for fusion. These results provide structural insight as to how neutralizing antibody engagement of CHIKV inhibits different stages of the viral life cycle, which could inform vaccine and therapeutic design.


  • Organizational Affiliation

    Program in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore 169857, Singapore.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
E1 glycoprotein439Chikungunya virusMutation(s): 0 
UniProt
Find proteins for Q8JUX5 (Chikungunya virus (strain S27-African prototype))
Explore Q8JUX5 
Go to UniProtKB:  Q8JUX5
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8JUX5
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
E2 glycoprotein419Chikungunya virusMutation(s): 0 
EC: 3.4.21.90
UniProt
Find proteins for Q8JUX5 (Chikungunya virus (strain S27-African prototype))
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Go to UniProtKB:  Q8JUX5
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UniProt GroupQ8JUX5
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein151Chikungunya virusMutation(s): 0 
EC: 3.4.21.90
UniProt
Find proteins for Q8JUX5 (Chikungunya virus (strain S27-African prototype))
Explore Q8JUX5 
Go to UniProtKB:  Q8JUX5
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UniProt GroupQ8JUX5
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Fab heavy chainJ [auth U],
U [auth W]
216Mus musculusMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Fab light chainK [auth T],
V
213Mus musculusMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentSingaporeMOH

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-04
    Type: Initial release
  • Version 1.1: 2020-11-18
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references