7CW2

Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-263 (subregion around icosahedral 5-fold vertex)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
BA [auth O]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
EA [auth R]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
G [auth I]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
H [auth C]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
HA [auth l]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
I [auth F]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
KA [auth o]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
NA [auth r]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
R [auth i]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
T [auth f]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
WA [auth S]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
Y [auth L]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
QA [auth u]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
S [auth c]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
TA [auth x]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth G]	PF01589	e7cw2G1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
A [auth G]	PF01589	e7cw2G2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
A [auth G]	PF01589	e7cw2G3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
C [auth A]	PF01589	e7cw2A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
C [auth A]	PF01589	e7cw2A3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
C [auth A]	PF01589	e7cw2A1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
CA [auth P]	PF01589	e7cw2P1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
CA [auth P]	PF01589	e7cw2P2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
CA [auth P]	PF01589	e7cw2P3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
E [auth D]	PF01589	e7cw2D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
E [auth D]	PF01589	e7cw2D2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
E [auth D]	PF01589	e7cw2D3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
FA [auth j]	PF01589	e7cw2j2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
FA [auth j]	PF01589	e7cw2j3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
FA [auth j]	PF01589	e7cw2j1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
IA [auth m]	PF01589	e7cw2m2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
IA [auth m]	PF01589	e7cw2m1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
IA [auth m]	PF01589	e7cw2m3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
L [auth g]	PF01589	e7cw2g1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
L [auth g]	PF01589	e7cw2g3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
L [auth g]	PF01589	e7cw2g2	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
LA [auth p]	PF01589	e7cw2p3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
LA [auth p]	PF01589	e7cw2p1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
LA [auth p]	PF01589	e7cw2p2	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
N [auth a]	PF01589	e7cw2a1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
N [auth a]	PF01589	e7cw2a3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
N [auth a]	PF01589	e7cw2a2	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
OA [auth s]	PF01589	e7cw2s2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
OA [auth s]	PF01589	e7cw2s3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
OA [auth s]	PF01589	e7cw2s1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
P [auth d]	PF01589	e7cw2d3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
P [auth d]	PF01589	e7cw2d2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
P [auth d]	PF01589	e7cw2d1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
RA [auth v]	PF01589	e7cw2v1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
RA [auth v]	PF01589	e7cw2v2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
RA [auth v]	PF01589	e7cw2v3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
UA [auth y]	PF01589	e7cw2y1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
UA [auth y]	PF01589	e7cw2y3	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
UA [auth y]	PF01589	e7cw2y2	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
W [auth J]	PF01589	e7cw2J1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
W [auth J]	PF01589	e7cw2J2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
W [auth J]	PF01589	e7cw2J3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
Z [auth M]	PF01589	e7cw2M3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01589	ECOD (1.6)
Z [auth M]	PF01589	e7cw2M2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: PF01589	ECOD (1.6)
Z [auth M]	PF01589	e7cw2M1	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: PF01589	ECOD (1.6)
BA [auth O]	PF00944	e7cw2O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
EA [auth R]	PF00944	e7cw2R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
G [auth I]	PF00944	e7cw2I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
H [auth C]	PF00944	e7cw2C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
HA [auth l]	PF00944	e7cw2l1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
I [auth F]	PF00944	e7cw2F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
KA [auth o]	PF00944	e7cw2o1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
NA [auth r]	PF00944	e7cw2r1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
R [auth i]	PF00944	e7cw2i1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
T [auth f]	PF00944	e7cw2f1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
WA [auth S]	PF00944	e7cw2S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
Y [auth L]	PF00944	e7cw2L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
QA [auth u]	PF00944	e7cw2u1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
S [auth c]	PF00944	e7cw2c1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
TA [auth x]	PF00944	e7cw2x1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF00944	ECOD (1.6)
U [auth W]	PF07654	e7cw2W1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
U [auth W]	PF07686	e7cw2W2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
J [auth U]	PF07654	e7cw2U1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
J [auth U]	PF07686	e7cw2U2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
K [auth T]	PF07654	e7cw2T1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
K [auth T]	PF07686	e7cw2T2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
V	PF07654	e7cw2V2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
V	PF07686	e7cw2V1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
J [auth U], U [auth W]	mAb CHK-263	VH-CH1	Mus musculus (house mouse)	IGHV1-8001, IGHJ201, IGHG2C01, IGHG2C02, IGHG2C*03	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_KAPPA	IMGT (202417-0)
K [auth T], V	mAb CHK-263	L-KAPPA	Mus musculus (house mouse)	IGKV5-4301, IGKJ201, IGKC01, IGKC02	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-1_KAPPA	IMGT (202417-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
J [auth U], U [auth W]	Heavy Chain	IGHV1	-	e2 glycoprotein \| e1 glycoprotein, unknown \| unknown	SAbDab (2024-05-03)
K [auth T], V	Light Chain	IGKV5	Kappa	e2 glycoprotein \| e1 glycoprotein, unknown \| unknown	SAbDab (2024-05-03)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	PF01589	Alphavirus E1 glycoprotein (Alpha_E1_glycop)	Alphavirus E1 glycoprotein	-	Family
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	PF00943	Alphavirus E2 glycoprotein (Alpha_E2_glycop)	Alphavirus E2 glycoprotein	-	Family
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	PF01589	Alphavirus E1 glycoprotein (Alpha_E1_glycop)	Alphavirus E1 glycoprotein	-	Family
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	PF00944	Alphavirus core protein (Peptidase_S3)	Alphavirus core protein	Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	E1 glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host symbiont-mediated perturbation of host cellular process response to stimulus viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response response to host response to external biotic stimulus symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated perturbation of host defense response response to host defenses response to other organism symbiont-mediated perturbation of host immune response response to defenses of other organism symbiont-mediated perturbation of host defenses response to external stimulus symbiont-mediated suppression of host signal transduction pathway modulation by symbiont of host process symbiont-mediated suppression of host toll-like receptor signaling pathway cellular process organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	E2 glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host symbiont-mediated perturbation of host cellular process response to stimulus viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response response to host response to external biotic stimulus symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated perturbation of host defense response response to host defenses response to other organism symbiont-mediated perturbation of host immune response response to defenses of other organism symbiont-mediated perturbation of host defenses response to external stimulus symbiont-mediated suppression of host signal transduction pathway modulation by symbiont of host process symbiont-mediated suppression of host toll-like receptor signaling pathway cellular process organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	Capsid protein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host symbiont-mediated perturbation of host cellular process response to stimulus viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host symbiont-mediated perturbation of host cellular process response to stimulus response to biotic stimulus symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response response to host response to external biotic stimulus symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated perturbation of host defense response response to host defenses response to other organism symbiont-mediated perturbation of host immune response response to defenses of other organism symbiont-mediated perturbation of host defenses response to external stimulus symbiont-mediated suppression of host signal transduction pathway modulation by symbiont of host process symbiont-mediated suppression of host toll-like receptor signaling pathway cellular process organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle
J [auth U], U [auth W]	Fab heavy chain	-	-	-
K [auth T], V	Fab light chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR000936	Alphavirus E2 glycoprotein	Family
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR000930	Peptidase S3, togavirin	Domain
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR002548	Alphavirus E1 glycoprotein	Domain
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], A [auth G], C [auth A], CA [auth P], E [auth D], FA [auth j], IA [auth m], L [auth g], LA [auth p], N [auth a], OA [auth s], P [auth d], RA [auth v], UA [auth y], W [auth J], Z [auth M]	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR000936	Alphavirus E2 glycoprotein	Family
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR000930	Peptidase S3, togavirin	Domain
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR002548	Alphavirus E1 glycoprotein	Domain
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], AA [auth N], B [auth H], D [auth B], DA [auth Q], F [auth E], GA [auth k], JA [auth n], M [auth h], MA [auth q], O [auth b], PA [auth t], Q [auth e], SA [auth w], VA [auth z], X [auth K]	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR000936	Alphavirus E2 glycoprotein	Family
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR000930	Peptidase S3, togavirin	Domain
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR002548	Alphavirus E1 glycoprotein	Domain
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], BA [auth O], EA [auth R], G [auth I], H [auth C], HA [auth l], I [auth F], KA [auth o], NA [auth r], QA [auth u], R [auth i], S [auth c], T [auth f], TA [auth x], WA [auth S], Y [auth L]	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily