7CNU

Crystal structure of DLC2 in complex with BMF peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.196 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Non-canonical phosphorylation of Bmf by p38 MAPK promotes its apoptotic activity in anoikis.

Zhi, Z.Ouyang, Z.Ren, Y.Cheng, Y.Liu, P.Wen, Y.Shao, Y.

(2022) Cell Death Differ 29: 323-336

  • DOI: https://doi.org/10.1038/s41418-021-00855-3
  • Primary Citation of Related Structures:  
    7CNU

  • PubMed Abstract: 

    Bmf contributes to the onset of anoikis by translocating from cytoskeleton to mitochondria when cells lose attachment to the extracellular matrix. However, the structural details of Bmf cytoskeleton tethering and the control of Bmf release upon loss of anchorage remained unknown. Here we showed that cell detachment induced rapid and sustained activation of p38 MAPK in mammary epithelial cell lines. Inhibition of p38 signaling or Bmf knockdown rescued anoikis. Activated p38 MAPK could directly phosphorylate Bmf at multiple sites including a non-proline-directed site threonine 72 (T72). Crystallographic studies revealed that Bmf T72 directly participated in DLC2 binding and its phosphorylation would block Bmf/DLC2 interaction through steric hindrance. Finally, we showed that phosphomimetic mutation of T72 enhanced Bmf apoptotic activity in vitro and in a knock-in mouse model. This work unraveled a novel regulatory mechanism of Bmf activity during anoikis and provided structural basis for Bmf cytoskeleton tethering and dissociation.


  • Organizational Affiliation

    Frontier Institute of Science and Technology, Xi'an Jiaotong University, Xi'an, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain 2, cytoplasmicA,
B,
D [auth E]
96Homo sapiensMutation(s): 0 
Gene Names: DYNLL2DLC2
UniProt & NIH Common Fund Data Resources
Find proteins for Q96FJ2 (Homo sapiens)
Explore Q96FJ2 
Go to UniProtKB:  Q96FJ2
PHAROS:  Q96FJ2
GTEx:  ENSG00000264364 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96FJ2
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Bcl-2-modifying factor20Homo sapiensMutation(s): 0 
Gene Names: BMF
UniProt & NIH Common Fund Data Resources
Find proteins for Q96LC9 (Homo sapiens)
Explore Q96LC9 
Go to UniProtKB:  Q96LC9
PHAROS:  Q96LC9
GTEx:  ENSG00000104081 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96LC9
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.196 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 166.243α = 90
b = 38.701β = 99.87
c = 44.699γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31870132

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-11
    Type: Initial release
  • Version 1.1: 2023-02-22
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description