7CKY

Cryo-EM structure of PW0464 bound dopamine receptor DRD1-Gs signaling complex

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Ligand recognition and allosteric regulation of DRD1-Gs signaling complexes.

Xiao, P., Yan, W., Gou, L., Zhong, Y.N., Kong, L., Wu, C., Wen, X., Yuan, Y., Cao, S., Qu, C., Yang, X., Yang, C.C., Xia, A., Hu, Z., Zhang, Q., He, Y.H., Zhang, D.L., Zhang, C., Hou, G.H., Liu, H., Zhu, L., Fu, P., Yang, S., Rosenbaum, D.M., Sun, J.P., Du, Y., Zhang, L., Yu, X., Shao, Z.

(2021) Cell 184: 943-956.e18

  • DOI: 10.1016/j.cell.2021.01.028
  • Primary Citation of Related Structures:  
    7CKW, 7CKX, 7CKY, 7CKZ, 7CRH

  • PubMed Abstract: 

    • Dopamine receptors, including D1- and D2-like receptors, are important therapeutic targets in a variety of neurological syndromes, as well as cardiovascular and kidney diseases. Here, we present five cryoelectron microscopy (cryo-EM) structures of the dopamine D1 receptor (DRD1) coupled to Gs heterotrimer in complex with three catechol-based agonists, a non-catechol agonist, and a positive allosteric modulator for endogenous dopamine ...

    Dopamine receptors, including D1- and D2-like receptors, are important therapeutic targets in a variety of neurological syndromes, as well as cardiovascular and kidney diseases. Here, we present five cryoelectron microscopy (cryo-EM) structures of the dopamine D1 receptor (DRD1) coupled to Gs heterotrimer in complex with three catechol-based agonists, a non-catechol agonist, and a positive allosteric modulator for endogenous dopamine. These structures revealed that a polar interaction network is essential for catecholamine-like agonist recognition, whereas specific motifs in the extended binding pocket were responsible for discriminating D1- from D2-like receptors. Moreover, allosteric binding at a distinct inner surface pocket improved the activity of DRD1 by stabilizing endogenous dopamine interaction at the orthosteric site. DRD1-Gs interface revealed key features that serve as determinants for G protein coupling. Together, our study provides a structural understanding of the ligand recognition, allosteric regulation, and G protein coupling mechanisms of DRD1.

    Organizational Affiliation: 

    Division of Nephrology and Kidney Research Institute, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China. Electronic address: zhenhuashao@scu.edu.cn.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms shortA394Homo sapiensMutation(s): 3 
Gene Names: GNAS, GNAS1, GSP
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63092 (Homo sapiens)
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Go to UniProtKB:  P63092
PHAROS:  P63092
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UniProt GroupP63092
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1B348Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
Explore P62873 
Go to UniProtKB:  P62873
PHAROS:  P62873
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UniProt GroupP62873
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
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UniProt GroupP59768
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Nanobody 35D [auth N]156Lama glamaMutation(s): 0 
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
D(1A) dopamine receptorE [auth R]446Homo sapiensMutation(s): 0 
Gene Names: DRD1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P21728 (Homo sapiens)
Explore P21728 
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PHAROS:  P21728
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UniProt GroupP21728
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Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
G3U (Subject of Investigation/LOI)
Query on G3U
Download Ideal Coordinates CCD File 
G [auth R]6-[4-[3-[bis(fluoranyl)methoxy]pyridin-2-yl]oxy-2-methyl-phenyl]-1,5-dimethyl-pyrimidine-2,4-dione
C19 H17 F2 N3 O4
ZXIPVZWZRQCIRW-UHFFFAOYSA-N		 Ligand Interaction
CLR
Query on CLR
Download Ideal Coordinates CCD File 
F [auth R]CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-03
    Type: Initial release