7CFU | pdb_00007cfu

Crystal Structure of FMN-dependent Cysteine Decarboxylases SpaF

PDB DOI: https://doi.org/10.2210/pdb7CFU/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Streptomyces sparsogenes DSM 40356
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-06-28 Released: 2021-06-30
Deposition Author(s): Li, J., Lu, J., Wang, H., Zhu, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.235 (Depositor), 0.240 (DCC)
R-Value Work:
0.203 (Depositor), 0.200 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Characterization of FMN-dependent Cysteine Decarboxylases SPAF

Lu, J., Li, J., Zhu, J., Wang, H.

To be published.

Macromolecule Content

Total Structure Weight: 539.3 kDa
Atom Count: 33,215
Modeled Residue Count: 4,200
Deposited Residue Count: 4,992
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA/pantothenate metabolism flavoprotein	A [auth F] B [auth S] C [auth H] D [auth P] E [auth A] A [auth F], B [auth S], C [auth H], D [auth P], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth G], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O], R [auth Q], S [auth R], T, U, V, W, X	208	Streptomyces sparsogenes DSM 40356	Mutation(s): 0 Gene Names: SPAR_40642
UniProt
Find proteins for A0A1R1S5L5 (Streptomyces sparsogenes DSM 40356) Explore A0A1R1S5L5 Go to UniProtKB: A0A1R1S5L5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1R1S5L5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN Query on FMN Download Ideal Coordinates CCD File SDF format, chain AA [auth S] SDF format, chain CA [auth P] SDF format, chain EA [auth B] SDF format, chain FA [auth C] SDF format, chain GA [auth D] SDF format, chain IA [auth G] SDF format, chain KA [auth J] SDF format, chain LA [auth K] SDF format, chain NA [auth M] SDF format, chain OA [auth N] SDF format, chain PA [auth O] SDF format, chain TA [auth U] SDF format, chain UA [auth V] SDF format, chain WA [auth X] SDF format, chain Y [auth F] SDF format, chain VA [auth W] SDF format, chain SA [auth T] SDF format, chain RA [auth R] SDF format, chain QA [auth Q] SDF format, chain MA [auth L] SDF format, chain JA [auth I] SDF format, chain HA [auth E] SDF format, chain DA [auth A] SDF format, chain BA [auth H] MOL2 format, chain AA [auth S] MOL2 format, chain CA [auth P] MOL2 format, chain EA [auth B] MOL2 format, chain FA [auth C] MOL2 format, chain GA [auth D] MOL2 format, chain IA [auth G] MOL2 format, chain KA [auth J] MOL2 format, chain LA [auth K] MOL2 format, chain NA [auth M] MOL2 format, chain OA [auth N] MOL2 format, chain PA [auth O] MOL2 format, chain TA [auth U] MOL2 format, chain UA [auth V] MOL2 format, chain WA [auth X] MOL2 format, chain Y [auth F] MOL2 format, chain VA [auth W] MOL2 format, chain SA [auth T] MOL2 format, chain RA [auth R] MOL2 format, chain QA [auth Q] MOL2 format, chain MA [auth L] MOL2 format, chain JA [auth I] MOL2 format, chain HA [auth E] MOL2 format, chain DA [auth A] MOL2 format, chain BA [auth H] mmCIF format, chain AA [auth S] mmCIF format, chain CA [auth P] mmCIF format, chain EA [auth B] mmCIF format, chain FA [auth C] mmCIF format, chain GA [auth D] mmCIF format, chain IA [auth G] mmCIF format, chain KA [auth J] mmCIF format, chain LA [auth K] mmCIF format, chain NA [auth M] mmCIF format, chain OA [auth N] mmCIF format, chain PA [auth O] mmCIF format, chain TA [auth U] mmCIF format, chain UA [auth V] mmCIF format, chain WA [auth X] mmCIF format, chain Y [auth F] mmCIF format, chain VA [auth W] mmCIF format, chain SA [auth T] mmCIF format, chain RA [auth R] mmCIF format, chain QA [auth Q] mmCIF format, chain MA [auth L] mmCIF format, chain JA [auth I] mmCIF format, chain HA [auth E] mmCIF format, chain DA [auth A] mmCIF format, chain BA [auth H]	AA [auth S] BA [auth H] CA [auth P] DA [auth A] EA [auth B] AA [auth S], BA [auth H], CA [auth P], DA [auth A], EA [auth B], FA [auth C], GA [auth D], HA [auth E], IA [auth G], JA [auth I], KA [auth J], LA [auth K], MA [auth L], NA [auth M], OA [auth N], PA [auth O], QA [auth Q], RA [auth R], SA [auth T], TA [auth U], UA [auth V], VA [auth W], WA [auth X], Y [auth F]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain AA [auth S] Focus chain BA [auth H] Focus chain CA [auth P] Focus chain DA [auth A] Focus chain EA [auth B] Focus chain FA [auth C] Focus chain GA [auth D] Focus chain HA [auth E] Focus chain IA [auth G] Focus chain JA [auth I] Focus chain KA [auth J] Focus chain LA [auth K] Focus chain MA [auth L] Focus chain NA [auth M] Focus chain OA [auth N] Focus chain PA [auth O] Focus chain QA [auth Q] Focus chain RA [auth R] Focus chain SA [auth T] Focus chain TA [auth U] Focus chain UA [auth V] Focus chain VA [auth W] Focus chain WA [auth X] Focus chain Y [auth F] Interactions & Density Focus chain AA [auth S] Focus chain BA [auth H] Focus chain CA [auth P] Focus chain DA [auth A] Focus chain EA [auth B] Focus chain FA [auth C] Focus chain GA [auth D] Focus chain HA [auth E] Focus chain IA [auth G] Focus chain JA [auth I] Focus chain KA [auth J] Focus chain LA [auth K] Focus chain MA [auth L] Focus chain NA [auth M] Focus chain OA [auth N] Focus chain PA [auth O] Focus chain QA [auth Q] Focus chain RA [auth R] Focus chain SA [auth T] Focus chain TA [auth U] Focus chain UA [auth V] Focus chain VA [auth W] Focus chain WA [auth X] Focus chain Y [auth F]
ARG Query on ARG Download Ideal Coordinates CCD File SDF format, chain Z [auth S] MOL2 format, chain Z [auth S] mmCIF format, chain Z [auth S]	Z [auth S]	ARGININE C₆ H₁₅ N₄ O₂ ODKSFYDXXFIFQN-BYPYZUCNSA-O		Interactions Focus chain Z [auth S] Interactions & Density Focus chain Z [auth S]