7BYO

Lysozyme structure SS1 from SS mode


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.174 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

High-brightness self-seeded X-ray free-electron laser covering the 3.5 keV to 14.6 keV range

Nam, I.Min, C.K.Oh, B.Kim, G.Na, D.Suh, Y.J.Yang, H.Cho, M.H.Kim, C.Kim, M.J.Shim, C.H.Ko, J.H.Heo, H.Park, J.Kim, J.Park, S.Park, G.Kim, S.Chun, S.H.Hyun, H.Lee, J.H.Kim, K.S.Eom, I.Rah, S.Shu, D.Kim, K.J.Terentyev, S.Blank, V.Shvydko, Y.Lee, S.J.Kang, H.S.

(2021) Nat Photonics 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Lysozyme CA147Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus)
Explore P00698 
Go to UniProtKB:  P00698
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00698
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.174 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.84α = 90
b = 78.84β = 90
c = 37.85γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
CrystFELdata reduction
CrystFELdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data

  • Deposited Date: 2020-04-24 
  • Released Date: 2021-03-31 
  • Deposition Author(s): Kang, H.S., Lee, S.J.

Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2017R1A2B4007274
National Research Foundation (NRF, Korea)Korea, Republic Of2020R1F1A1075828
National Research Foundation (NRF, Korea)Korea, Republic Of2018R1A6B4023605

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release