7BWM

Cryo-EM structure of the human pathogen Mycoplasma pneumoniae P1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Immunodominant proteins P1 and P40/P90 from human pathogen Mycoplasma pneumoniae.

Vizarraga, D.Kawamoto, A.Matsumoto, U.Illanes, R.Perez-Luque, R.Martin, J.Mazzolini, R.Bierge, P.Pich, O.Q.Espasa, M.Sanfeliu, I.Esperalba, J.Fernandez-Huerta, M.Scheffer, M.P.Pinyol, J.Frangakis, A.S.Lluch-Senar, M.Mori, S.Shibayama, K.Kenri, T.Kato, T.Namba, K.Fita, I.Miyata, M.Aparicio, D.

(2020) Nat Commun 11: 5188-5188

  • DOI: https://doi.org/10.1038/s41467-020-18777-y
  • Primary Citation of Related Structures:  
    6RC9, 6RJ1, 6TLZ, 6TM0, 7BWM

  • PubMed Abstract: 

    Mycoplasma pneumoniae is a bacterial human pathogen that causes primary atypical pneumonia. M. pneumoniae motility and infectivity are mediated by the immunodominant proteins P1 and P40/P90, which form a transmembrane adhesion complex. Here we report the structure of P1, determined by X-ray crystallography and cryo-electron microscopy, and the X-ray structure of P40/P90. Contrary to what had been suggested, the binding site for sialic acid was found in P40/P90 and not in P1. Genetic and clinical variability concentrates on the N-terminal domain surfaces of P1 and P40/P90. Polyclonal antibodies generated against the mostly conserved C-terminal domain of P1 inhibited adhesion of M. pneumoniae, and serology assays with sera from infected patients were positive when tested against this C-terminal domain. P40/P90 also showed strong reactivity against human infected sera. The architectural elements determined for P1 and P40/P90 open new possibilities in vaccine development against M. pneumoniae infections.


  • Organizational Affiliation

    Instituto de Biología Molecular de Barcelona (IBMB-CSIC), Parc Científic de Barcelona, Baldiri Reixac 10, 08028, Barcelona, Spain.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Adhesin P11,328Mycoplasmoides pneumoniae M129Mutation(s): 0 
Gene Names: mgpAMPN_141MP013
UniProt
Find proteins for P11311 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P11311 
Go to UniProtKB:  P11311
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP11311
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2.1
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan25000013
Japan Agency for Medical Research and Development (AMED)JapanJP19am0101117
Japan Agency for Medical Research and Development (AMED)JapanJP17pc0101020
Japan Society for the Promotion of Science (JSPS)Japan24117002
Japan Society for the Promotion of Science (JSPS)Japan24390107
Japan Society for the Promotion of Science (JSPS)Japan17H01544
Japan Society for the Promotion of Science (JSPS)JapanJPMJCR19S5

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-28
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references, Refinement description