7BSF

Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (T5C mutant)

  • Classification: DNA
  • Organism(s): synthetic construct
  • Mutation(s): No 

  • Deposited: 2020-03-30 Released: 2020-12-16 
  • Deposition Author(s): Kondo, J., Cerretani, C., Vosch, T.
  • Funding Organization(s): Ministry of Education, Culture, Sports, Science and Technology (Japan)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.10 Å
  • R-Value Free: 0.083 
  • R-Value Work: 0.075 
  • R-Value Observed: 0.076 

wwPDB Validation   3D Report Full Report



Literature

Mutation of position 5 as a crystal engineering tool for a NIR-emitting DNA-stabilized Ag16 nanocluster.

Cerretani, C., Kondo, J., Vosch, T.

(2020) CrystEngComm 22: 8136-8141


Macromolecules
  • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*CP*AP*CP*CP*CP*AP*GP*CP*GP*A)-3')A, B10synthetic construct
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 1.10 Å
    • R-Value Free: 0.083 
    • R-Value Work: 0.075 
    • R-Value Observed: 0.076 
    • Space Group: P 21 21 21
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 23.958α = 90
    b = 33.807β = 90
    c = 52.523γ = 90
    Software Package:
    Software NamePurpose
    XSCALEdata scaling
    PHENIXrefinement
    PDB_EXTRACTdata extraction
    PHENIXphasing
    XDSdata reduction

    Structure Validation

    View Full Validation Report


    View more in-depth experimental data

    Entry History & Funding Information

    Deposition Data

    Funding OrganizationLocationGrant Number
    Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan--

    Revision History 

    • Version 1.0: 2020-12-16
      Type: Initial release