7B0M | pdb_00007b0m

Sugar transaminase from a metagenome collected from troll oil field production water

PDB DOI: https://doi.org/10.2210/pdb7B0M/pdb

Classification: TRANSFERASE
Organism(s): uncultured bacterium
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-11-20 Released: 2021-12-01
Deposition Author(s): Littlechild, J.A., De Rose, S.A., Isupov, M.N., Sayer, C., Karki, S.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.43 Å
R-Value Free:
0.197 (Depositor), 0.200 (DCC)
R-Value Work:
0.165 (Depositor), 0.170 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Sugar transaminases from hot environments

James, P., Littlechild, J.A., De Rose, S.A., Isupov, M.N., Karki, S., Tabji, A.B., Garcia-Moyano, A., Birkeland, N.K.

To be published.

Macromolecule Content

Total Structure Weight: 43.19 kDa
Atom Count: 3,469
Modeled Residue Count: 369
Deposited Residue Count: 375
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sugar aminotransferase	A [auth AAA]	375	uncultured bacterium	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PG4 Query on PG4 Download Ideal Coordinates CCD File SDF format, chain F [auth AAA] MOL2 format, chain F [auth AAA] mmCIF format, chain F [auth AAA]	F [auth AAA]	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Interactions Focus chain F [auth AAA] Interactions & Density Focus chain F [auth AAA]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain K [auth AAA] SDF format, chain I [auth AAA] SDF format, chain G [auth AAA] MOL2 format, chain K [auth AAA] MOL2 format, chain I [auth AAA] MOL2 format, chain G [auth AAA] mmCIF format, chain K [auth AAA] mmCIF format, chain I [auth AAA] mmCIF format, chain G [auth AAA]	G [auth AAA], I [auth AAA], K [auth AAA]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain G [auth AAA] Focus chain I [auth AAA] Focus chain K [auth AAA] Interactions & Density Focus chain G [auth AAA] Focus chain I [auth AAA] Focus chain K [auth AAA]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain J [auth AAA] SDF format, chain H [auth AAA] SDF format, chain E [auth AAA] SDF format, chain D [auth AAA] SDF format, chain C [auth AAA] SDF format, chain B [auth AAA] MOL2 format, chain J [auth AAA] MOL2 format, chain H [auth AAA] MOL2 format, chain E [auth AAA] MOL2 format, chain D [auth AAA] MOL2 format, chain C [auth AAA] MOL2 format, chain B [auth AAA] mmCIF format, chain J [auth AAA] mmCIF format, chain H [auth AAA] mmCIF format, chain E [auth AAA] mmCIF format, chain D [auth AAA] mmCIF format, chain C [auth AAA] mmCIF format, chain B [auth AAA]	B [auth AAA] C [auth AAA] D [auth AAA] E [auth AAA] H [auth AAA] B [auth AAA], C [auth AAA], D [auth AAA], E [auth AAA], H [auth AAA], J [auth AAA]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain B [auth AAA] Focus chain C [auth AAA] Focus chain D [auth AAA] Focus chain E [auth AAA] Focus chain H [auth AAA] Focus chain J [auth AAA] Interactions & Density Focus chain B [auth AAA] Focus chain C [auth AAA] Focus chain D [auth AAA] Focus chain E [auth AAA] Focus chain H [auth AAA] Focus chain J [auth AAA]