Download MendeleyStructural and functional characterization of the cambialistic superoxide dismutase from Rhodobacter capsulatus.
Ponce-Salvatierra, A., Di Capua, C., Gonzalez, J., Cortez, N., Hermoso, J.A.To be published.
7AZR
Crystal structure of the iron/manganese cambialistic superoxide dismutase from Rhodobacter capsulatus complex with Mn
- PDB DOI: https://doi.org/10.2210/pdb7AZR/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Rhodobacter capsulatus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-11-17 Released: 2021-12-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.193
- R-Value Work: 0.173
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Superoxide dismutase [Fe] | A, B [auth E] | 199 | Rhodobacter capsulatus | Mutation(s): 0 Gene Names: sodB, sod EC: 1.15.1.1 |  |
UniProt | |||||
Find proteins for O30970 (Rhodobacter capsulatus) Explore O30970 Go to UniProtKB: O30970 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O30970 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MN Query on MN | C [auth A], E | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| CA Query on CA | D [auth A], F [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.193
- R-Value Work: 0.173
- R-Value Observed: 0.174
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 162.65 | α = 90 |
| b = 162.65 | β = 90 |
| c = 44 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2021-12-01 Deposition Author(s): Ponce-Salvatierra, A., Hermoso, J.A.
Revision History (Full details and data files)
- Version 1.0: 2021-12-01
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Refinement description
