7AL8 | pdb_00007al8

Structure of ATSI with bovine trypsin

PDB DOI: https://doi.org/10.2210/pdb7AL8/pdb

Classification: HYDROLASE
Organism(s): Bos taurus, Amaranthus caudatus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-10-05 Released: 2021-10-13
Deposition Author(s): Reverter, D., Covaleda, G.
Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free:
0.331 (Depositor), 0.330 (DCC)
R-Value Work:
0.274 (Depositor), 0.270 (DCC)
R-Value Observed:
0.277 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structure of ATSI with bovine trypsin

Reverter, D., Covaleda, G.

To be published.

Macromolecule Content

Total Structure Weight: 252.37 kDa
Atom Count: 17,481
Modeled Residue Count: 2,320
Deposited Residue Count: 2,336
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cationic trypsin	A [auth U] C [auth B] E G [auth H] I [auth K] A [auth U], C [auth B], E, G [auth H], I [auth K], K [auth N], M [auth Q], O [auth T]	223	Bos taurus	Mutation(s): 0 EC: 3.4.21.4
UniProt
Find proteins for P00760 (Bos taurus) Explore P00760 Go to UniProtKB: P00760
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00760
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Trypsin/subtilisin inhibitor	B [auth X] D [auth C] F H [auth I] J [auth L] B [auth X], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth R], P [auth V]	69	Amaranthus caudatus	Mutation(s): 0
UniProt
Find proteins for P80211 (Amaranthus caudatus) Explore P80211 Go to UniProtKB: P80211
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P80211
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain Z [auth F] SDF format, chain Y [auth F] SDF format, chain X [auth E] SDF format, chain V [auth C] SDF format, chain U [auth C] SDF format, chain T [auth B] SDF format, chain SA [auth V] SDF format, chain S [auth X] SDF format, chain RA [auth V] SDF format, chain R [auth X] SDF format, chain QA [auth T] SDF format, chain Q [auth U] SDF format, chain OA [auth R] SDF format, chain NA [auth Q] SDF format, chain MA [auth Q] SDF format, chain LA [auth Q] SDF format, chain JA [auth O] SDF format, chain IA [auth N] SDF format, chain HA [auth N] SDF format, chain GA [auth L] SDF format, chain FA [auth L] SDF format, chain EA [auth K] SDF format, chain DA [auth I] SDF format, chain CA [auth I] SDF format, chain BA [auth H] MOL2 format, chain Z [auth F] MOL2 format, chain Y [auth F] MOL2 format, chain X [auth E] MOL2 format, chain V [auth C] MOL2 format, chain U [auth C] MOL2 format, chain T [auth B] MOL2 format, chain SA [auth V] MOL2 format, chain S [auth X] MOL2 format, chain RA [auth V] MOL2 format, chain R [auth X] MOL2 format, chain QA [auth T] MOL2 format, chain Q [auth U] MOL2 format, chain OA [auth R] MOL2 format, chain NA [auth Q] MOL2 format, chain MA [auth Q] MOL2 format, chain LA [auth Q] MOL2 format, chain JA [auth O] MOL2 format, chain IA [auth N] MOL2 format, chain HA [auth N] MOL2 format, chain GA [auth L] MOL2 format, chain FA [auth L] MOL2 format, chain EA [auth K] MOL2 format, chain DA [auth I] MOL2 format, chain CA [auth I] MOL2 format, chain BA [auth H] mmCIF format, chain Z [auth F] mmCIF format, chain Y [auth F] mmCIF format, chain X [auth E] mmCIF format, chain V [auth C] mmCIF format, chain U [auth C] mmCIF format, chain T [auth B] mmCIF format, chain SA [auth V] mmCIF format, chain S [auth X] mmCIF format, chain RA [auth V] mmCIF format, chain R [auth X] mmCIF format, chain QA [auth T] mmCIF format, chain Q [auth U] mmCIF format, chain OA [auth R] mmCIF format, chain NA [auth Q] mmCIF format, chain MA [auth Q] mmCIF format, chain LA [auth Q] mmCIF format, chain JA [auth O] mmCIF format, chain IA [auth N] mmCIF format, chain HA [auth N] mmCIF format, chain GA [auth L] mmCIF format, chain FA [auth L] mmCIF format, chain EA [auth K] mmCIF format, chain DA [auth I] mmCIF format, chain CA [auth I] mmCIF format, chain BA [auth H]	BA [auth H] CA [auth I] DA [auth I] EA [auth K] FA [auth L] BA [auth H], CA [auth I], DA [auth I], EA [auth K], FA [auth L], GA [auth L], HA [auth N], IA [auth N], JA [auth O], LA [auth Q], MA [auth Q], NA [auth Q], OA [auth R], Q [auth U], QA [auth T], R [auth X], RA [auth V], S [auth X], SA [auth V], T [auth B], U [auth C], V [auth C], X [auth E], Y [auth F], Z [auth F]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain BA [auth H] Focus chain CA [auth I] Focus chain DA [auth I] Focus chain EA [auth K] Focus chain FA [auth L] Focus chain GA [auth L] Focus chain HA [auth N] Focus chain IA [auth N] Focus chain JA [auth O] Focus chain LA [auth Q] Focus chain MA [auth Q] Focus chain NA [auth Q] Focus chain OA [auth R] Focus chain Q [auth U] Focus chain QA [auth T] Focus chain R [auth X] Focus chain RA [auth V] Focus chain S [auth X] Focus chain SA [auth V] Focus chain T [auth B] Focus chain U [auth C] Focus chain V [auth C] Focus chain X [auth E] Focus chain Y [auth F] Focus chain Z [auth F] Interactions & Density Focus chain BA [auth H] Focus chain CA [auth I] Focus chain DA [auth I] Focus chain EA [auth K] Focus chain FA [auth L] Focus chain GA [auth L] Focus chain HA [auth N] Focus chain IA [auth N] Focus chain JA [auth O] Focus chain LA [auth Q] Focus chain MA [auth Q] Focus chain NA [auth Q] Focus chain OA [auth R] Focus chain Q [auth U] Focus chain QA [auth T] Focus chain R [auth X] Focus chain RA [auth V] Focus chain S [auth X] Focus chain SA [auth V] Focus chain T [auth B] Focus chain U [auth C] Focus chain V [auth C] Focus chain X [auth E] Focus chain Y [auth F] Focus chain Z [auth F]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain W [auth E] SDF format, chain PA [auth T] SDF format, chain KA [auth Q] SDF format, chain AA [auth H] MOL2 format, chain W [auth E] MOL2 format, chain PA [auth T] MOL2 format, chain KA [auth Q] MOL2 format, chain AA [auth H] mmCIF format, chain W [auth E] mmCIF format, chain PA [auth T] mmCIF format, chain KA [auth Q] mmCIF format, chain AA [auth H]	AA [auth H], KA [auth Q], PA [auth T], W [auth E]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain AA [auth H] Focus chain KA [auth Q] Focus chain PA [auth T] Focus chain W [auth E] Interactions & Density Focus chain AA [auth H] Focus chain KA [auth Q] Focus chain PA [auth T] Focus chain W [auth E]