Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*GP*AP*CP*TP*CP*CP*AP*CP*TP*CP*A)-3') | A | 21 | synthetic construct | ![]() | |
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*AP*GP*TP*CP*T)-3') | B | 5 | synthetic construct | ![]() | |
Protein Feature ViewExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*G)-3') | C | 9 | synthetic construct | ![]() | |
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Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*GP*GP*TP*CP*TP*GP*C)-3') | D | 7 | synthetic construct | ![]() | |
Protein Feature ViewExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CAC Query on CAC | E [auth C], F [auth C], G [auth D] | CACODYLATE ION C2 H6 As O2 OGGXGZAMXPVRFZ-UHFFFAOYSA-M | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 68.458 | α = 90 |
b = 68.458 | β = 90 |
c = 60.214 | γ = 120 |
Software Name | Purpose |
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HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Science Foundation (NSF, United States) | United States | 1360635 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01GM104960 |
National Science Foundation (NSF, United States) | United States | NSF2004250 |