6VZ7

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of transcription-translation coupling.

Wang, C.Molodtsov, V.Firlar, E.Kaelber, J.T.Blaha, G.Su, M.Ebright, R.H.

(2020) Science 369: 1359-1365

  • DOI: 10.1126/science.abb5317
  • Primary Citation of Related Structures:  
    6VYR, 6VZ3, 6VYQ, 6VZ2, 6VYT, 6VZ5, 6VYS, 6VZ7, 6VYU, 6VYX, 6VYW, 6VZJ, 6VYZ, 6VYY, 6VU3, 6X7F, 6X7K, 6X6T, 6X9Q, 6XDR, 6XDQ, 6XGF, 6XIJ, 6XII

  • PubMed Abstract: 
  • In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the transcription factors NusG (which is thought to bridge RNAP and the ribosome) and NusA ...

    In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the transcription factors NusG (which is thought to bridge RNAP and the ribosome) and NusA. Here, we report cryo-electron microscopy structures of Escherichia coli transcription-translation complexes (TTCs) containing different-length mRNA spacers between RNAP and the ribosome active-center P site. Structures of TTCs containing short spacers show a state incompatible with NusG bridging and NusA binding (TTC-A, previously termed "expressome"). Structures of TTCs containing longer spacers reveal a new state compatible with NusG bridging and NusA binding (TTC-B) and reveal how NusG bridges and NusA binds. We propose that TTC-B mediates NusG- and NusA-dependent transcription-translation coupling.


    Organizational Affiliation

    Waksman Institute and Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ 08854, USA. minsu@umich.edu ebright@waksman.rutgers.edu.



Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L21A [auth 0]103Escherichia coliMutation(s): 0 
Gene Names: rplU
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Find proteins for D7ZEN7 (Escherichia coli MS 69-1)
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L22B [auth 1]110Escherichia coliMutation(s): 0 
Gene Names: rplV
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Find proteins for D7Z9G0 (Escherichia coli MS 69-1)
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L23C [auth 2]94Escherichia coliMutation(s): 0 
Gene Names: rplW
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Find proteins for D6I208 (Escherichia coli B088)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L24D [auth 3]103Escherichia coliMutation(s): 0 
Gene Names: rplX
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Find proteins for D7XKZ6 (Escherichia coli MS 84-1)
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L25E [auth 4]94Escherichia coliMutation(s): 0 
Gene Names: rplY
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Find proteins for D7XH79 (Escherichia coli MS 84-1)
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit betaJ [auth AA]1341Escherichia coliMutation(s): 0 
Gene Names: rpoBACN002_4074EL79_4408HMPREF3040_01777
EC: 2.7.7.6
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Find proteins for A0A0A0GWV9 (Escherichia coli)
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusGK [auth AB]112Escherichia coliMutation(s): 0 
Gene Names: nusGE2148_24035
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit alphaL [auth AC], M [auth AD]230Escherichia coliMutation(s): 0 
Gene Names: rpoAELT49_23095
EC: 2.7.7.6
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunitN [auth AE]1358Escherichia coliMutation(s): 0 
Gene Names: rpoCELV15_17980
EC: 2.7.7.6
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Find proteins for A0A659GYB8 (Escherichia coli)
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit omegaO [auth AF]83Escherichia coliMutation(s): 0 
Gene Names: rpoZ
EC: 2.7.7.6
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Find proteins for A0A1X3IVJ5 (Escherichia coli TA447)
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S18Q [auth C]66Escherichia coliMutation(s): 0 
Gene Names: rpsR
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Find proteins for A0A6D2XHZ3 (Escherichia coli (strain K12))
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S20S [auth E]86Escherichia coliMutation(s): 0 
Gene Names: rpsT
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Find proteins for D7X3A7 (Escherichia coli MS 198-1)
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S21T [auth F]70Escherichia coliMutation(s): 0 
Gene Names: rpsU
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S2U [auth G]225Escherichia coliMutation(s): 0 
Gene Names: 
rpsBA6581_19565A6592_02990A8C65_17850A9819_00790A9P13_21180A9R57_04400AAW05_12805AC067_04635AJ318_03080AM446_22760AM464_17645AM465_25885AML35_22875APT94_19995APU18_02555ARC77_20180AU473_25970AUQ13_07500AW059_09840AWE53_010740AWF59_003780AWG78_007095AWG90_002345AWP75_13480AZZ83_003980B6V57_00930B7C53_01360B9M99_16250B9N33_22515B9T59_07520BANRA_00547BANRA_02273BANRA_03339BE963_14830BEN53_03085BER14_07785BFD68_21815BHF03_16550BHF46_07885BHS87_00800BIQ87_00790BIU72_13410BIZ41_19080BJJ90_21360BK248_07255BK334_15020BK373_09595BK375_04645BK383_20240BMA87_12300BMT49_02175BMT91_01365BON65_09430BON66_02955BON75_17145BON83_24855BON86_04410BON87_26695BON91_06960BON92_02750BON96_17215BON98_18185BTQ04_14405BUE81_01710BvCms12BK_00034BvCms2454_04107BvCms35BK_02145BvCmsC61A_04364BvCmsHHP001_04838BvCmsHHP019_00044BvCmsHHP056_04094BvCmsKKP036_03788BvCmsKSNP120_00104BvCmsKSP026_04711BvCmsKSP058_03767BvCmsKSP076_03014BvCmsNSP007_03764BvCmsSINP022_00326BW690_02470BWI89_14055BWP17_11915BXT93_00705BZL31_14940BZL69_20205C2M16_10795C2U48_09610C4K41_20910C4M78_19960C5715_17350C5F72_21625C5F73_07955C5N07_08575C5P44_18010C6669_04250C6B13_04325C7B06_05860C7B07_04280C7B08_09695C7B18_05305C9E25_15390C9E67_25210C9Z23_08405C9Z29_10375C9Z39_04990C9Z43_09525C9Z68_04785C9Z70_08115C9Z78_00165C9Z78_02775CA593_02870CCZ14_20505CCZ17_20470CDC27_24690CDL37_07245CG692_09500CI693_15090CI694_28160CIG45_06990CQP61_22090CR539_04935CRE06_00170CRJUMX01_610033CRT43_00990CRX46_05020CSB64_09595CT146_12115CUB99_08015CVH05_24475CWM24_05035D0X26_09420D1912_13690D2185_20130D2188_12785D3821_06210D3822_17335D3M98_08935D3O91_03185D3P01_06970D3P02_17575D3Y67_16405D4011_00170D4023_14650D4074_16625D4638_01785D4660_00170D4718_00170D4L91_00170D4M06_01450D4U49_05950D4U85_02335D4V08_16070D5I97_00170D6C36_00175D6D43_00170D6T60_04050D6X63_10625D6X76_09800D7K33_03410D7K63_00165D7K66_11610D7Y10_00165D8Y65_01905D9C99_12680D9D20_18630D9D31_08885D9D33_03385D9D43_02305D9D44_06780D9D94_08705D9E13_16330D9E34_01105D9E35_14530D9E49_02145D9E73_02485D9F17_00165D9F32_01785D9G11_19100D9G29_09875D9G42_07585D9G48_08785D9G69_05830D9H10_00165D9H36_21790D9H53_14245D9H68_13775D9H70_04355D9I20_08115D9I37_13510D9I87_01640D9I88_06435D9I97_03805D9J03_00165D9J11_16825D9J52_04560D9J58_13455D9J60_02075D9J78_12380D9K02_06620D9K54_16750D9L89_00165D9L99_05940D9X77_14905D9X97_00165D9Z28_03940DAH26_11215DAH34_04190DAH37_16335DAH43_04025DBQ99_21360DD762_01090DEN86_04070DJ487_06020DJ492_12760DJ503_00895DK132_00130DL251_18750DL257_01645DL292_03085DL326_07525DL455_01615DL979_07560DLT82_10665DLW88_03755DLX38_05600DLX40_11060DLY44_08780DM102_18365DM129_14540DM272_00165DM280_04680DM962_03245DM973_00130DMC44_08865DMI04_00170DMI53_01515DMO02_00170DMZ50_04115DN627_10245DN703_10125DNB37_01435DNC98_14250DND16_04815DNJ62_00170DNK12_00170DNR35_01445DNR41_13200DNX30_02270DOE35_00170DOM23_00165DOS18_01655DOT81_00170DOU81_00170DOY22_00170DOY56_00170DP258_09355DQE91_03230DQG35_00170DRP48_00170DS721_00170DS966_12905DT034_05340DTL43_05925DTL90_09735DTM10_02780DTM45_12630DTZ20_16560DU309_06140DU321_03650DU333_05950DW236_10615DWB25_20305DXT73_18920DXX80_017135E0L04_16465E0L12_05055E2112_01240E2114_18160E2115_17375E2119_15580E2127_15010E2128_01350E2129_02860E2134_11975E2135_11635E2148_14070E4A44_06400E4K51_05790E4K55_06965E4K60_12610E4K61_17665E5P22_04090E5P28_13975E5P37_21190E5S56_11570E5S58_05605E5S61_20145E5S62_13855EA159_18560EA164_17320EA167_19605EA174_03755EA184_05180EA189_12745EA191_19905EA198_08655EA200_20625EA203_17930EA213_17805EA214_17045EA218_05095EA222_15560EA225_05600EA231_02020EA232_17985EA233_03700EA235_19385EA239_13420EA242_20415EA245_19675EA247_16770EA250_20395EA410_04885EA429_13730EA433_18610EA434_02545EA435_20380EA834_19145EAI42_08300EAI52_11005EB509_04560EB510_04565EB515_00165EBA84_00165EBJ06_10275EC3234A_2c01500EC3426_00920EC382_02955ECONIH1_00890ECs0171ECTO124_04042ECTO6_03894ED225_10455ED307_13035ED607_02625ED611_09635ED648_00165ED903_08485ED944_00165EEA45_04510EEP23_00165EF082_10775EF173_00165EG808_13600EGC26_04060EGT48_20250EGU87_00165EHD45_00165EHD63_00165EHJ66_10080EHV81_01735EHV90_15890EHW09_06780EHX09_00165EI021_19845EI028_17525EI032_14690EI041_03160EIA08_06325EIA21_00165EIZ93_07925EL75_3596EL79_3705EL80_3652ELT17_01250ELT20_04470ELT22_08875ELT23_12175ELT33_15870ELT48_12180ELT49_18475ELT58_11815ELU82_16775ELU85_21270ELU96_20275ELV00_10925ELV05_06475ELV13_13145ELV15_10275ELV22_16455ELV24_19200ELV28_04185ELX56_19475ELX70_19405ELX76_14550ELX79_12490ELX83_20605ELY23_06765ELY24_11290ELY41_06540ELY48_16915ELY50_16140EO241_11800EPS76_09885EPS91_15145EPS94_12740EPT01_02595EPU41_00950EQ820_08895EQ823_16635EQ825_22910EQ830_01905EQO00_21085ERL57_05895ERS085365_03087ERS085366_02719ERS085383_01177ERS085386_01543ERS085404_00708ERS085406_00569ERS085411_00031ERS085416_03650ERS139211_02987ERS150873_01111EST51_20100EVY14_15615EWK56_14885EXM29_15760ExPECSC019_03545ExPECSC038_03990ExPECSC065_04179EXX06_08815EXX13_05315EXX23_14665EXX53_06965EXX55_08280EXX71_19560EXX87_03335EYD11_18540EYX82_24365EYX99_20960EYY27_25445EYY34_22885F7F11_02075F7G01_02645F7G03_01455F9040_13535F9050_00165F9059_17980F9B07_03520F9X20_09355F9Z74_08200FAF34_018075FE846_19735FKO60_12340FNJ67_21465FNJ69_22375FNJ83_02345FORC82_3871FPI65_00925FQ021_14140FQU83_21885FRV13_02390FV293_02895FV295_13970FV438_03735FY127_02945FZC17_23565FZN26_20725FZN30_04795G3565_18165G5603_21760G5608_21995G5616_00165G5675_00165G5688_15330G5696_01310G5697_15860GFU40_18985GFU45_18860GFU47_13780GHR40_00590GII91_13045GIJ01_03570GIY13_04535GIY19_11140GJ11_00885GJ638_08085GJD97_22995GKE15_05200GKE16_05185GKE22_02185GKE24_06260GKE26_05200GKE29_08795GKE31_05160GKE39_03930GKE46_02210GKE53_02210GKE58_05115GKE60_05170GKE64_02210GKE69_03515GKE77_05545GKE79_03920GKE87_12060GKE92_14180GKE93_04110GKE98_08645GKF03_12930GKF21_15805GKF28_16145GKF34_15440GKF39_01190GKF47_15415GKF52_14725GKF74_13200GKF86_01190GKF89_14780GKG08_11265GKG09_11865GKG11_12455GKG12_02120GKG22_11875GKG29_11915GN312_14025GNZ00_06515GNZ02_07900GP662_15455GP664_18015GP671_16645GP678_08070GP689_18795GP700_07630GP711_09530GP712_03555GP720_09585GP727_05960GP892_07445GP912_05760GQA06_13075GQA23_04980GQE22_02625GQE33_20285GQE34_08855GQE36_01700GQE42_12800GQE47_19150GQE58_21125GQE64_01395GQE68_05070GQE87_01035GQE88_09270GQM13_12620GQM17_05190GQM18_05750GQN33_07395GQS26_13490GQY14_02320GRW05_07695GRW27_19960GRW42_18985GRW57_10410GRW80_16650GRW81_09810GUB08_19160GUC40_06245GUI16_06125GUI33_00165GZS12_18935HmCms169_00360HmCms184_03911HmCmsJML074_03001HmCmsJML146_01754HmCmsJML204_00825HmCmsJML236_01511HMPREF3040_02610MJ49_06195MS6198_01840MS8345_00167NCTC10082_01383NCTC10089_04076NCTC10090_02160NCTC10767_03962NCTC10963_04191NCTC10974_04616NCTC11126_03634NCTC12650_04328NCTC12950_04424NCTC13127_05455NCTC13148_05196NCTC13846_03878NCTC7922_05813NCTC7927_04507NCTC7928_04613NCTC8450_01117NCTC8500_04546NCTC8621_04202NCTC8959_04843NCTC9007_00459NCTC9044_03184NCTC9045_04711NCTC9050_02026NCTC9058_02797NCTC9062_04214NCTC9117_05053NCTC9119_04267NCTC9434_02610NCTC9701_04378NCTC9702_04760NCTC9706_01337NCTC9777_00472NCTC9969_04265PGD_03810RK56_028000SAMEA3472044_04157SAMEA3472047_02498SAMEA3472056_00973SAMEA3472080_03752SAMEA3472090_04487SAMEA3472108_03201SAMEA3472110_04513SAMEA3472112_04653SAMEA3472147_00380SAMEA3484427_01375SAMEA3484429_01106SAMEA3484434_01147SAMEA3752372_04458SAMEA3752557_00874SAMEA3752559_03712SAMEA3752620_02090SAMEA3753097_03905SAMEA3753164_02433SAMEA3753300_01863SK85_00168SY51_00965U12A_00178U14A_00177UC41_07420UN91_10580WQ89_09555YDC107_3394

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Entity ID: 20
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30S ribosomal protein S1V [auth H]557Escherichia coliMutation(s): 0 
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Entity ID: 21
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30S ribosomal protein S3W [auth I]208Escherichia coliMutation(s): 0 
Gene Names: rpsCG4V09_06545NCTC9094_00425
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Find proteins for A0A376HTV6 (Escherichia coli)
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Entity ID: 22
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30S ribosomal protein S4X [auth J]205Escherichia coliMutation(s): 0 
Gene Names: rpsD
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Find proteins for L3PZ69 (Escherichia coli KTE75)
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Entity ID: 23
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30S ribosomal protein S5Y [auth K]156Escherichia coliMutation(s): 0 
Gene Names: rpsE
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Entity ID: 24
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30S ribosomal protein S6Z [auth L]104Escherichia coliMutation(s): 0 
Gene Names: rpsFNCTC8179_00894
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Entity ID: 25
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30S ribosomal protein S7AA [auth M]151Escherichia coliMutation(s): 0 
Gene Names: rpsG
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Entity ID: 26
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30S ribosomal protein S8BA [auth N]129Escherichia coliMutation(s): 0 
Gene Names: rpsH
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Entity ID: 27
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30S ribosomal protein S9CA [auth O]127Escherichia coliMutation(s): 0 
Gene Names: rpsI
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Entity ID: 28
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30S ribosomal protein S10DA [auth P]99Escherichia coliMutation(s): 0 
Gene Names: rpsJ
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Find proteins for I2X6I5 (Escherichia coli 2.3916)
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Entity ID: 29
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30S ribosomal protein S11EA [auth Q]117Escherichia coliMutation(s): 0 
Gene Names: rpsK
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Entity ID: 30
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30S ribosomal protein S12FA [auth R]123Escherichia coliMutation(s): 0 
Gene Names: rpsL
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Find proteins for V6FZ95 (Escherichia coli 99.0741)
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Entity ID: 31
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30S ribosomal protein S14GA [auth S]100Escherichia coliMutation(s): 0 
Gene Names: rpsN
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Find proteins for A0A073G231 (Escherichia coli 2-427-07_S4_C3)
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Entity ID: 32
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30S ribosomal protein S15HA [auth T]88Escherichia coliMutation(s): 0 
Gene Names: rpsO
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Find proteins for D7XN21 (Escherichia coli MS 84-1)
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Entity ID: 33
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30S ribosomal protein S16IA [auth U]82Escherichia coliMutation(s): 0 
Gene Names: rpsP
UniProt
Find proteins for B7MIU7 (Escherichia coli O45:K1 (strain S88 / ExPEC))
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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S17JA [auth V]80Escherichia coliMutation(s): 0 
Gene Names: rpsQ
UniProt
Find proteins for A0A080IK26 (Escherichia coli 1-250-04_S3_C2)
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Entity ID: 35
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30S ribosomal protein S19KA [auth W]83Escherichia coliMutation(s): 0 
Gene Names: rpsS
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Find proteins for S1EA57 (Escherichia coli KTE73)
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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S13LA [auth X]116Escherichia coliMutation(s): 0 
Gene Names: rpsM
UniProt
Find proteins for A0A0H3ML81 (Escherichia coli O7:K1 (strain IAI39 / ExPEC))
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Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L27OA [auth b]76Escherichia coliMutation(s): 0 
Gene Names: rpmA
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Find proteins for I2X5R7 (Escherichia coli 2.3916)
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Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L28PA [auth c]77Escherichia coliMutation(s): 0 
Gene Names: rpmB
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Find proteins for A0A556Y8P1 (Escherichia coli O177)
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Entity ID: 42
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50S ribosomal protein L29RA [auth e]62Escherichia coliMutation(s): 0 
Gene Names: rpmC
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Find proteins for I2X6R6 (Escherichia coli 2.3916)
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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L30SA [auth f]58Escherichia coliMutation(s): 0 
Gene Names: rpmD
UniProt
Find proteins for A0A073FR56 (Escherichia coli 2-427-07_S4_C3)
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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L31TA [auth g]66Escherichia coliMutation(s): 0 
Gene Names: rpmE
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Find proteins for V0YYV3 (Escherichia coli 908573)
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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L2UA [auth h]271Escherichia coliMutation(s): 0 
Gene Names: rplB
UniProt
Find proteins for P60422 (Escherichia coli (strain K12))
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Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L32VA [auth i]56Escherichia coliMutation(s): 0 
Gene Names: rpmF
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Find proteins for D7XI28 (Escherichia coli MS 84-1)
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Entity ID: 47
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50S ribosomal protein L3WA [auth j]209Escherichia coliMutation(s): 0 
Gene Names: rplC
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Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L33XA [auth k]52Escherichia coliMutation(s): 0 
Gene Names: rpmG
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Find proteins for V6FW62 (Escherichia coli 99.0741)
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Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L4YA [auth l]201Escherichia coliMutation(s): 0 
Gene Names: rplD
UniProt
Find proteins for D7Z9F6 (Escherichia coli MS 69-1)
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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L34ZA [auth m]46Escherichia coliMutation(s): 0 
Gene Names: rpmH
UniProt
Find proteins for B7MGC4 (Escherichia coli O45:K1 (strain S88 / ExPEC))
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Entity ID: 51
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50S ribosomal protein L5AB [auth n]177Escherichia coliMutation(s): 0 
Gene Names: rplE
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Find proteins for T6LFZ6 (Escherichia coli HVH 87)
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Entity ID: 52
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50S ribosomal protein L35BB [auth o]64Escherichia coliMutation(s): 0 
Gene Names: rpmI
UniProt
Find proteins for A0A0A0FFH2 (Escherichia coli G3/10)
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Entity ID: 53
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L6CB [auth p]175Escherichia coliMutation(s): 0 
Gene Names: rplF
UniProt
Find proteins for E9YV47 (Escherichia coli M863)
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Entity ID: 54
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50S ribosomal protein L36DB [auth q]38Escherichia coliMutation(s): 0 
Gene Names: rpmJ
UniProt
Find proteins for A0A0E2L017 (Escherichia coli (strain UMEA 3162-1))
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Entity ID: 55
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50S ribosomal protein L9EB [auth r]149Escherichia coliMutation(s): 0 
Gene Names: rplI
UniProt
Find proteins for D7ZI15 (Escherichia coli MS 69-1)
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Entity ID: 56
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L13FB [auth s]142Escherichia coliMutation(s): 0 
Gene Names: rplM
UniProt
Find proteins for D7ZET0 (Escherichia coli MS 69-1)
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Entity ID: 57
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50S ribosomal protein L14GB [auth t]123Escherichia coliMutation(s): 0 
Gene Names: rplN
UniProt
Find proteins for D7Z9G5 (Escherichia coli MS 69-1)
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Entity ID: 58
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L15HB [auth u]144Escherichia coliMutation(s): 0 
Gene Names: 
rplOA8C65_19395A9R57_24660ACU57_21045AM464_09135AUQ13_22145BANRA_01932BANRA_03684BHS87_18545BJJ90_02210BMA87_18510BON75_18850BON98_13310BUE81_25610BvCms2454_01416BvCmsHHP001_00334BvCmsHHP019_04131BvCmsHHP056_02703BvCmsKSP026_02554BvCmsSINP011_02480BW690_10710BZL31_22885C5F72_02595C5F73_02860C5N07_23575C9E25_20065C9Z39_20710CA593_09735CG692_20270CI693_13520CI694_01990CIG45_22410D0X26_24495D2185_22985D3821_17755D3O91_20305D3Y67_24390D4638_19455D4718_17880D9C99_17930D9D20_21995D9D44_22490D9G29_15635D9G69_20945D9H68_17710D9J52_19090D9Z28_15390DAH37_14685DBQ99_03415DJ503_19770DL326_22310DNC98_19095DT034_22410DTL43_21000E2119_19640E2134_21880E2135_06185E4A44_21305E4K51_21490E4K55_21420E4K60_18985E4K61_20025E5P22_10480E5P28_20875EA213_19860EAI42_04990EAI52_16365EC1094V2_354EC3234A_55c00230EC3426_04459ECTO6_00449ED307_17010EEP23_17135EG808_17075EI021_21030EI028_20740EI032_18995EI041_20035EIZ93_12470EL75_0396EL79_0415EL80_0407ELT20_19170EPT01_19765ERS085365_03907ERS085416_03881ERS139211_03685ERS150873_04051EXX71_21335EYD11_02080F1E19_19655F9040_18095FRV13_20015FV293_22465FWK02_06270G5632_17770G5688_20025GHR40_07050GKF39_20550GKF74_18130GKF86_20070GKF89_18470GP671_20580GP689_20785GP954_00945GP979_02005GQE33_22230GQE34_14255GQE64_20420GQM17_19915GRW05_09060GRW27_21285GRW42_19350GRW57_03540GRW80_20585GRW81_21150NCTC10963_00456NCTC11022_03475NCTC11126_02772NCTC12650_00710NCTC13216_01351NCTC9045_00567NCTC9062_02686NCTC9117_00757NCTC9706_02738PGD_00585RK56_021420SAMEA3472047_03862SAMEA3472080_04748SAMEA3484427_04887SAMEA3484429_04875SAMEA3752559_00346SAMEA3753300_02227

UniProt
Find proteins for A0A037Y8L6 (Escherichia coli)
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Entity ID: 59
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L16IB [auth v]136Escherichia coliMutation(s): 0 
Gene Names: rplP
UniProt
Find proteins for P0ADY7 (Escherichia coli (strain K12))
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Entity ID: 60
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L17JB [auth w]119Escherichia coliMutation(s): 0 
Gene Names: rplQC6985_20075NCTC10767_01524NCTC9081_00927
UniProt
Find proteins for A0A2T1LEK9 (Escherichia coli)
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Entity ID: 61
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L18KB [auth x]116Escherichia coliMutation(s): 0 
Gene Names: rplR
UniProt
Find proteins for H4JDL8 (Escherichia coli DEC1D)
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Entity ID: 62
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50S ribosomal protein L19LB [auth y]114Escherichia coliMutation(s): 0 
Gene Names: rplS
UniProt
Find proteins for A0A069XKC0 (Escherichia coli 3-373-03_S4_C2)
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Entity ID: 63
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L20MB [auth z]117Escherichia coliMutation(s): 0 
Gene Names: rplT
UniProt
Find proteins for V6FS92 (Escherichia coli 99.0741)
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Entity ID: 6
MoleculeChainsLengthOrganismImage
NT DNAF [auth 5]27synthetic construct
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Entity ID: 7
MoleculeChainsLengthOrganismImage
T DNAG [auth 6]27synthetic construct
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  • Entity ID: 8
    MoleculeChainsLengthOrganismImage
    mRNA with 27 nt long spacerH [auth 7]16synthetic construct
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    Entity ID: 9
    MoleculeChainsLengthOrganismImage
    E-site and P-site tRNA (fMet)I [auth A], P [auth B]76Escherichia coli
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    Entity ID: 16
    MoleculeChainsLengthOrganismImage
    16S rRNAR [auth D]1542Escherichia coli
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    • Entity ID: 37
      MoleculeChainsLengthOrganismImage
      mRNA in the ribosomal RNA entrance poreMA [auth Y]3synthetic construct
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      Entity ID: 38
      MoleculeChainsLengthOrganismImage
      23S rRNANA [auth a]2903Escherichia coli
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      Entity ID: 41
      MoleculeChainsLengthOrganismImage
      5S rRNAQA [auth d]120Escherichia coli
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      Small Molecules
      Ligands 2 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      ZN
      Query on ZN

      Download Ideal Coordinates CCD File 
      OB [auth AA], PB [auth AA]ZINC ION
      Zn
      PTFCDOFLOPIGGS-UHFFFAOYSA-N
       Ligand Interaction
      MG
      Query on MG

      Download Ideal Coordinates CCD File 
      NB [auth 7]MAGNESIUM ION
      Mg
      JLVVSXFLKOJNIY-UHFFFAOYSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: ELECTRON MICROSCOPY
      • Resolution: 7.00 Å
      • Aggregation State: PARTICLE 
      • Reconstruction Method: SINGLE PARTICLE 

      Structure Validation

      View Full Validation Report




      Entry History & Funding Information

      Deposition Data


      Funding OrganizationLocationGrant Number
      National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

      Revision History  (Full details and data files)

      • Version 1.0: 2020-09-02
        Type: Initial release
      • Version 1.1: 2020-09-23
        Changes: Database references