6VZ7 | pdb_00006vz7

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 0]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
T [auth F]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
X [auth J]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
BA [auth N]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
DA [auth P]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
FA [auth R]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
IA [auth U]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
KA [auth W]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
OA [auth b]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
RA [auth e]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
TA [auth g]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
VA [auth i]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
WA [auth j]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
AB [auth n]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
EB [auth r]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
EB [auth r]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
GB [auth t]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
IB [auth v]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
LB [auth y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
MB [auth z]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
KB [auth x]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
JB [auth w]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
HB [auth u]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
FB [auth s]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
DB [auth q]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
CB [auth p]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
CB [auth p]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
BB [auth o]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
YA [auth l]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
XA [auth k]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
UA [auth h]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
UA [auth h]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
SA [auth f]SCOP2 FamilyRibosomal protein L30p/L7e 8096081 4001360 SCOP2 (2022-06-29)
SA [auth f]SCOP2 SuperfamilyRibosomal protein L30p/L7e 8096082 3001378 SCOP2 (2022-06-29)
SA [auth f]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
PA [auth c]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
LA [auth X]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
JA [auth V]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
HA [auth T]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
GA [auth S]SCOP2 FamilyRibosomal protein S14p/S29e 8096083 4003647 SCOP2 (2022-06-29)
GA [auth S]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8096084 3000068 SCOP2 (2022-06-29)
GA [auth S]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
EA [auth Q]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
CA [auth O]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
AA [auth M]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
Z [auth L]SCOP2 FamilyRibosomal protein S6 8096725 4001337 SCOP2 (2022-06-29)
Z [auth L]SCOP2 SuperfamilyRibosomal protein S6 8096726 3001323 SCOP2 (2022-06-29)
Z [auth L]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
L [auth AC]SCOP2B SuperfamilyRBP11-like subunits of RNA polymerase 8035907 3001655 SCOP2B (2022-06-29)
L [auth AC]SCOP2B SuperfamilyInsert subdomain of RNA polymerase alpha subunit 8037279 3001500 SCOP2B (2022-06-29)
L [auth AC]SCOP2B SuperfamilyRBP11-like subunits of RNA polymerase 8035907 3001655 SCOP2B (2022-06-29)
K [auth AB]SCOP2 FamilyN-utilization substance G protein NusG, N-terminal domain-like 8096847 4003239 SCOP2 (2022-06-29)
K [auth AB]SCOP2 SuperfamilyN-utilization substance G protein NusG, N-terminal domain 8096848 3000474 SCOP2 (2022-06-29)
K [auth AB]SCOP2B SuperfamilyN-utilization substance G protein NusG, N-terminal domain 8080353 3000474 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]Ribosomal_L21pe6vz701 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
N [auth AE]RNA_pol_Rpb1_2e6vz7AE3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: RNA_pol_Rpb1_2ECOD (1.6)
N [auth AE]PRK00566_2nde6vz7AE6 A: a+b two layersX: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: PRK00566_2ndECOD (1.6)
N [auth AE]PRK14844e6vz7AE7 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: PRK14844ECOD (1.6)
N [auth AE]RNA_pol_Rpb1_5_1ste6vz7AE9 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: RNA_pol_Rpb1_5_1stECOD (1.6)
N [auth AE]PRK00566_3rd,RNA_pol_Rpb1_5_3rde6vz7AE2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: PRK00566_3rd,RNA_pol_Rpb1_5_3rdECOD (1.6)
N [auth AE]RNA_pol_Rpb1_1e6vz7AE1 A: a+b complex topologyX: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)T: N-terminal domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_1ECOD (1.6)
N [auth AE]RNA_pol_Rpb1_5_3rde6vz7AE5 A: a+b complex topologyX: central helical domain in RNA-polymerase beta-prime subunit (From Topology)H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)T: central helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_5_3rdECOD (1.6)
N [auth AE]RNA_pol_Rpb1_4e6vz7AE4 A: a+b complex topologyX: second helical domain in RNA-polymerase beta-prime subunit (From Topology)H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)T: second helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_4ECOD (1.6)
N [auth AE]RNA_pol_Rpb1_3e6vz7AE8 A: a+b complex topologyX: first helical domain in RNA-polymerase beta-prime subunit (From Topology)H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)T: first helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_3ECOD (1.6)
O [auth AF]RNA_pol_Rpb6e6vz7AF1 A: alpha arraysX: RPB6/omega subunit-like (From Homology)H: RPB6/omega subunit-likeT: RNA polymerase omega subunitF: RNA_pol_Rpb6ECOD (1.6)
Q [auth C]Ribosomal_S18e6vz7C1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
S [auth E]Ribosomal_S20pe6vz7E1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
T [auth F]Ribosomal_S21e6vz7F1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
V [auth H]S1_1e6vz7H3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
X [auth J]S4e6vz7J1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
BA [auth N]Ribosomal_S8_Ne6vz7N1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
BA [auth N]Ribosomal_S8_Ce6vz7N2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
DA [auth P]Ribosomal_S10e6vz7P1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
FA [auth R]Ribosom_S12_S23e6vz7R1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
IA [auth U]Ribosomal_S16e6vz7U1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
KA [auth W]Ribosomal_S19e6vz7W1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
OA [auth b]Ribosomal_L27e6vz7b1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
RA [auth e]Ribosomal_L29e6vz7e1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
TA [auth g]Ribosomal_L31e6vz7g1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
VA [auth i]Ribosomal_L32pe6vz7i1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
WA [auth j]Ribosomal_L3e6vz7j1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
AB [auth n]Ribosomal_L5_Ce6vz7n1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
EB [auth r]Ribosomal_L9_Ne6vz7r1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
EB [auth r]Ribosomal_L9_C_1e6vz7r2 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
GB [auth t]Ribosomal_L14e6vz7t1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
IB [auth v]Ribosomal_L16e6vz7v1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
LB [auth y]Ribosomal_L19e6vz7y1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
MB [auth z]Ribosomal_L20e6vz7z1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
KB [auth x]Ribosomal_L18pe6vz7x1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
JB [auth w]Ribosomal_L17_1e6vz7w1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
HB [auth u]Ribosomal_L27Ae6vz7u1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
FB [auth s]Ribosomal_L13e6vz7s1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
DB [auth q]Ribosomal_L36e6vz7q1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
CB [auth p]Ribosomal_L6e6vz7p1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
CB [auth p]Ribosomal_L6_1e6vz7p2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
BB [auth o]Ribosomal_L35pe6vz7o1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
ZA [auth m]Ribosomal_L34e6vz7m1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
E [auth 4]Ribosomal_L25pe6vz741 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
YA [auth l]Ribosomal_L4e6vz7l1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
XA [auth k]Ribosomal_L33e6vz7k1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
UA [auth h]Ribosomal_L2_1e6vz7h1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
UA [auth h]Ribosomal_L2_Ce6vz7h2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
SA [auth f]Ribosomal_L30e6vz7f1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
PA [auth c]Ribosomal_L28e6vz7c1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
D [auth 3]ribosomal_L24_1e6vz731 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
LA [auth X]Ribosomal_S13_1e6vz7X1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
JA [auth V]Ribosomal_S17_1e6vz7V1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
HA [auth T]Ribosomal_S15_1e6vz7T1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
GA [auth S]Ribosomal_S14_1e6vz7S1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
C [auth 2]Ribosomal_L23_2e6vz721 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
EA [auth Q]Ribosomal_S11e6vz7Q1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
CA [auth O]Ribosomal_S9e6vz7O1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
AA [auth M]Ribosomal_S7_1e6vz7M1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
Z [auth L]Ribosomal_S6e6vz7L1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
Y [auth K]Ribosomal_S5_Ce6vz7K2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
Y [auth K]Ribosomal_S5e6vz7K1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
W [auth I]Ribosomal_S3_Ce6vz7I1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
W [auth I]KH_2_1e6vz7I2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
B [auth 1]Ribosomal_L22e6vz711 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
U [auth G]Ribosomal_S2e6vz7G1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
M [auth AD]RNA_pol_Le6vz7AD2 A: a+b two layersX: DCoH-likeH: RBP11-like subunits of RNA polymerase (From Topology)T: RBP11-like subunits of RNA polymeraseF: RNA_pol_LECOD (1.6)
M [auth AD]RNA_pol_A_bace6vz7AD1 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Insert subdomain of RNA polymerase alpha subunit (From Topology)T: Insert subdomain of RNA polymerase alpha subunitF: RNA_pol_A_bacECOD (1.6)
L [auth AC]RNA_pol_Le6vz7AC2 A: a+b two layersX: DCoH-likeH: RBP11-like subunits of RNA polymerase (From Topology)T: RBP11-like subunits of RNA polymeraseF: RNA_pol_LECOD (1.6)
L [auth AC]RNA_pol_A_bace6vz7AC1 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Insert subdomain of RNA polymerase alpha subunit (From Topology)T: Insert subdomain of RNA polymerase alpha subunitF: RNA_pol_A_bacECOD (1.6)
K [auth AB]NusGe6vz7AB1 A: a+b two layersX: Alpha-beta plaitsH: N-utilization substance G protein NusG, N-terminal domain (From Topology)T: N-utilization substance G protein NusG, N-terminal domainF: NusGECOD (1.6)
J [auth AA]RNA_pol_Rpb2_6_3rde6vz7AA9 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: RNA_pol_Rpb2_6_3rdECOD (1.6)
J [auth AA]PRK09603e6vz7AA1 A: a+b two layersX: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: PRK09603ECOD (1.6)
J [auth AA]RNA_pol_Rpb2_6_2nde6vz7AA10 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: RNA_pol_Rpb2_6_2ndECOD (1.6)
J [auth AA]RNA_pol_Rpb2_6_1ste6vz7AA6 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: RNA_pol_Rpb2_6_1stECOD (1.6)
J [auth AA]RNA_pol_Rpb2_6_2nd_2e6vz7AA8 A: a+b complex topologyX: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit (From Topology)H: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit (From Topology)T: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunitF: RNA_pol_Rpb2_6_2nd_2ECOD (1.6)
J [auth AA]RNA_pol_Rpb2_3e6vz7AA5 A: a+b complex topologyX: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: N-terminal domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_3ECOD (1.6)
J [auth AA]RNA_pol_Rpb2_1e6vz7AA3 A: a+b complex topologyX: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: insertion domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_1ECOD (1.6)
J [auth AA]RNA_pol_Rpb2_45e6vz7AA7 A: a+b complex topologyX: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: barrel domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_45ECOD (1.6)
J [auth AA]RNA_pol_Rpb2_7e6vz7AA4 A: a+b complex topologyX: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: C-terminal domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_7ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
I [auth A],
P [auth B]		PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
N [auth AE]PF00623RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2)RNA polymerase Rpb1, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site. The invariant motif -NADFDGD- binds the active site magnesium ion [1,2].
Domain
N [auth AE]PF05000RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4)RNA polymerase Rpb1, domain 4RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel domain. The funnel contain the binding site for some elongation factors [1,2].
Domain
N [auth AE]PF04983RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3)RNA polymerase Rpb1, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [1,2].
Domain
N [auth AE]PF04998RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5)RNA polymerase Rpb1, domain 5RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound [1,2].
Domain
N [auth AE]PF04997RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1)RNA polymerase Rpb1, domain 1RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp dom ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [1,2].
Domain
O [auth AF]PF01192RNA polymerase Rpb6 (RNA_pol_Rpb6)RNA polymerase Rpb6- Family
Q [auth C]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
S [auth E]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
S [auth E]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
T [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
T [auth F]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
V [auth H]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
V [auth H]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
V [auth H]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Domain
X [auth J]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
X [auth J]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
X [auth J]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
BA [auth N]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
BA [auth N]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
BA [auth N]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
DA [auth P]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
DA [auth P]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
FA [auth R]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domainDomain
FA [auth R]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
IA [auth U]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
IA [auth U]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
KA [auth W]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
KA [auth W]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
E [auth 4]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
D [auth 3]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
D [auth 3]PF00467KOW motif (KOW)KOW motif- Family
LA [auth X]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
LA [auth X]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
JA [auth V]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
JA [auth V]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
HA [auth T]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
GA [auth S]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
GA [auth S]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
C [auth 2]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
EA [auth Q]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
CA [auth O]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
AA [auth M]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
Z [auth L]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
Z [auth L]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
Y [auth K]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
Y [auth K]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
W [auth I]PF07650KH domain (KH_2)KH domainDomain
W [auth I]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
W [auth I]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
B [auth 1]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
U [auth G]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
L [auth AC],
M [auth AD]		PF01193RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L)RNA polymerase Rpb3/Rpb11 dimerisation domainThe two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.
Domain
L [auth AC],
M [auth AD]		PF01000RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac)RNA polymerase Rpb3/RpoA insert domainMembers of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal Domain
K [auth AB]PF02357Transcription termination factor nusG (NusG)Transcription termination factor nusGDomain
J [auth AA]PF04561RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2)RNA polymerase Rpb2, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain [1]. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 1 (DRI).
Domain
J [auth AA]PF10385RNA polymerase beta subunit external 1 domain (RNA_pol_Rpb2_45)RNA polymerase beta subunit external 1 domainRNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between ...RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between domains 4 and 5 of the yeast protein. It is also known as the external 1 region of the polymerase and is bound in association with the external 2 region [1].
Domain
J [auth AA]PF04560RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7)RNA polymerase Rpb2, domain 7RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp [1]. The clamp region (C-terminal) contains a zinc-binding motif [1]. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription [1].
Domain
J [auth AA]PF04565RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3)RNA polymerase Rpb2, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site [1].
Domain
J [auth AA]PF04563RNA polymerase beta subunit (RNA_pol_Rpb2_1)RNA polymerase beta subunit- Family
J [auth AA]PF00562RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6)RNA polymerase Rpb2, domain 6RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain [1]. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion[1]. This domain is also involved in binding to Rpb1 and Rpb3 [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]50S ribosomal protein L21
I [auth A],
P [auth B]		E-site and P-site tRNA (fMet)---
N [auth AE]DNA-directed RNA polymerase subunit
O [auth AF]DNA-directed RNA polymerase subunit omega
Q [auth C]30S ribosomal protein S18
R [auth D]16S rRNA---
S [auth E]30S ribosomal protein S20
T [auth F]30S ribosomal protein S21
V [auth H]30S ribosomal protein S1
X [auth J]30S ribosomal protein S4
BA [auth N]30S ribosomal protein S8
DA [auth P]30S ribosomal protein S10
FA [auth R]30S ribosomal protein S12
IA [auth U]30S ribosomal protein S16
KA [auth W]30S ribosomal protein S19
MA [auth Y]mRNA in the ribosomal RNA entrance pore---
OA [auth b]50S ribosomal protein L27
QA [auth d]5S rRNA---
RA [auth e]50S ribosomal protein L29
TA [auth g]50S ribosomal protein L31
VA [auth i]50S ribosomal protein L32
WA [auth j]50S ribosomal protein L3
AB [auth n]50S ribosomal protein L5
EB [auth r]50S ribosomal protein L9
GB [auth t]50S ribosomal protein L14
IB [auth v]50S ribosomal protein L16
LB [auth y]50S ribosomal protein L19
H [auth 7]mRNA with 27 nt long spacer---
G [auth 6]T DNA---
MB [auth z]50S ribosomal protein L20
KB [auth x]50S ribosomal protein L18
JB [auth w]50S ribosomal protein L17
F [auth 5]NT DNA---
HB [auth u]50S ribosomal protein L15
FB [auth s]50S ribosomal protein L13
DB [auth q]50S ribosomal protein L36
CB [auth p]50S ribosomal protein L6
BB [auth o]50S ribosomal protein L35
ZA [auth m]50S ribosomal protein L34
E [auth 4]50S ribosomal protein L25
YA [auth l]50S ribosomal protein L4
XA [auth k]50S ribosomal protein L33
UA [auth h]50S ribosomal protein L2
SA [auth f]50S ribosomal protein L30
PA [auth c]50S ribosomal protein L28
D [auth 3]50S ribosomal protein L24
NA [auth a]23S rRNA---
LA [auth X]30S ribosomal protein S13
JA [auth V]30S ribosomal protein S17
HA [auth T]30S ribosomal protein S15
GA [auth S]30S ribosomal protein S14
C [auth 2]50S ribosomal protein L23
EA [auth Q]30S ribosomal protein S11
CA [auth O]30S ribosomal protein S9
AA [auth M]30S ribosomal protein S7
Z [auth L]30S ribosomal protein S6
Y [auth K]30S ribosomal protein S5
W [auth I]30S ribosomal protein S3
B [auth 1]50S ribosomal protein L22
U [auth G]30S ribosomal protein S2
L [auth AC],
M [auth AD]		DNA-directed RNA polymerase subunit alpha
K [auth AB]Transcription termination/antitermination protein NusG-
J [auth AA]DNA-directed RNA polymerase subunit beta

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR028909Large ribosomal subunit protein bL21-likeFamily
A [auth 0]IPR001787Large ribosomal subunit protein bL21Family
A [auth 0]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
A [auth 0]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
N [auth AE]IPR007081RNA polymerase Rpb1, domain 5Domain
N [auth AE]IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
N [auth AE]IPR007083RNA polymerase Rpb1, domain 4Domain
N [auth AE]IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
N [auth AE]IPR006592RNA polymerase, N-terminalDomain
N [auth AE]IPR007066RNA polymerase Rpb1, domain 3Domain
N [auth AE]IPR012754DNA-directed RNA polymerase, subunit beta-prime, bacterial typeFamily
N [auth AE]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
N [auth AE]IPR000722RNA polymerase, alpha subunitDomain
N [auth AE]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
N [auth AE]IPR007080RNA polymerase Rpb1, domain 1Domain
O [auth AF]IPR006110RNA polymerase, subunit omega/Rpo6/RPB6Family
O [auth AF]IPR036161RPB6/omega subunit-like superfamilyHomologous Superfamily
O [auth AF]IPR003716DNA-directed RNA polymerase, omega subunitFamily
Q [auth C]IPR001648Small ribosomal subunit protein bS18Family
Q [auth C]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
Q [auth C]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth E]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
S [auth E]IPR002583Small ribosomal subunit protein bS20Family
T [auth F]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
T [auth F]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
T [auth F]IPR001911Small ribosomal subunit protein bS21Family
V [auth H]IPR035104Ribosomal protein S1-likeFamily
V [auth H]IPR003029S1 domainDomain
V [auth H]IPR050437Small ribosomal subunit protein bS1-likeFamily
V [auth H]IPR000110Small ribosomal subunit protein bS1Family
V [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
X [auth J]IPR002942RNA-binding S4 domainDomain
X [auth J]IPR022801Small ribosomal subunit protein uS4Family
X [auth J]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
X [auth J]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
X [auth J]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
X [auth J]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
BA [auth N]IPR000630Small ribosomal subunit protein uS8Family
BA [auth N]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
BA [auth N]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
DA [auth P]IPR027486Small ribosomal subunit protein uS10 domainDomain
DA [auth P]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
DA [auth P]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
DA [auth P]IPR001848Small ribosomal subunit protein uS10Family
FA [auth R]IPR005679Ribosomal protein uS12, bacteriaFamily
FA [auth R]IPR006032Small ribosomal subunit protein uS12Family
FA [auth R]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IA [auth U]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
IA [auth U]IPR000307Small ribosomal subunit protein bS16Family
IA [auth U]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
KA [auth W]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
KA [auth W]IPR002222Small ribosomal subunit protein uS19Family
KA [auth W]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
KA [auth W]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
OA [auth b]IPR001684Large ribosomal subunit protein bL27Family
OA [auth b]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
RA [auth e]IPR050063Universal ribosomal protein uL29Family
RA [auth e]IPR001854Large ribosomal subunit protein uL29Family
RA [auth e]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
RA [auth e]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
TA [auth g]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
TA [auth g]IPR027491Large ribosomal subunit protein bL31 type AFamily
TA [auth g]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
TA [auth g]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
VA [auth i]IPR002677Large ribosomal subunit protein bL32Family
VA [auth i]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth i]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
WA [auth j]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
WA [auth j]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
WA [auth j]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
WA [auth j]IPR000597Large ribosomal subunit protein uL3Family
AB [auth n]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
AB [auth n]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
AB [auth n]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
AB [auth n]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
AB [auth n]IPR002132Large ribosomal subunit protein uL5Family
AB [auth n]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
EB [auth r]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
EB [auth r]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
EB [auth r]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
EB [auth r]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
EB [auth r]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
EB [auth r]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
EB [auth r]IPR000244Large ribosomal subunit protein bL9Family
GB [auth t]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
GB [auth t]IPR000218Large ribosomal subunit protein uL14Family
GB [auth t]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
GB [auth t]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
IB [auth v]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
IB [auth v]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IB [auth v]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
IB [auth v]IPR016180Large ribosomal subunit protein uL16 domainDomain
IB [auth v]IPR047873Large ribosomal subunit protein uL16Family
LB [auth y]IPR001857Large ribosomal subunit protein bL19Family
LB [auth y]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
LB [auth y]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
LB [auth y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MB [auth z]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
MB [auth z]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
MB [auth z]IPR005813Large ribosomal subunit protein bL20Family
KB [auth x]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
KB [auth x]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
JB [auth w]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
JB [auth w]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
JB [auth w]IPR000456Large ribosomal subunit protein bL17Family
HB [auth u]IPR021131Large ribosomal subunit protein uL15/eL18Domain
HB [auth u]IPR030878Large ribosomal subunit protein uL15Family
HB [auth u]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
HB [auth u]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
HB [auth u]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
FB [auth s]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
FB [auth s]IPR005822Large ribosomal subunit protein uL13Family
FB [auth s]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
FB [auth s]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
DB [auth q]IPR000473Large ribosomal subunit protein bL36Family
DB [auth q]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
CB [auth p]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
CB [auth p]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
CB [auth p]IPR000702Large ribosomal subunit protein uL6-likeFamily
CB [auth p]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
CB [auth p]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
BB [auth o]IPR021137Large ribosomal subunit protein bL35-likeFamily
BB [auth o]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
BB [auth o]IPR001706Large ribosomal subunit protein bL35Family
BB [auth o]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
ZA [auth m]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
ZA [auth m]IPR000271Large ribosomal subunit protein bL34Family
E [auth 4]IPR020055Ribosomal protein bL25, short-formFamily
E [auth 4]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
E [auth 4]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
E [auth 4]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
E [auth 4]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
YA [auth l]IPR013005Large ribosomal subunit protein uL4-likeFamily
YA [auth l]IPR002136Large ribosomal subunit protein uL4Family
YA [auth l]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
XA [auth k]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XA [auth k]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
XA [auth k]IPR001705Large ribosomal subunit protein bL33Family
XA [auth k]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
UA [auth h]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
UA [auth h]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
UA [auth h]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
UA [auth h]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
UA [auth h]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
UA [auth h]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
UA [auth h]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
UA [auth h]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
UA [auth h]IPR002171Large ribosomal subunit protein uL2Family
SA [auth f]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
SA [auth f]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
SA [auth f]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
SA [auth f]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
PA [auth c]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
PA [auth c]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
PA [auth c]IPR026569Large ribosomal subunit protein bL28Family
PA [auth c]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
D [auth 3]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth 3]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth 3]IPR003256Large ribosomal subunit protein uL24Family
D [auth 3]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
D [auth 3]IPR005824KOWDomain
D [auth 3]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
LA [auth X]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
LA [auth X]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
LA [auth X]IPR001892Small ribosomal subunit protein uS13Family
LA [auth X]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
LA [auth X]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
JA [auth V]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
JA [auth V]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
JA [auth V]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
JA [auth V]IPR000266Small ribosomal subunit protein uS17Family
HA [auth T]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
HA [auth T]IPR000589Small ribosomal subunit protein uS15Family
HA [auth T]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
GA [auth S]IPR001209Small ribosomal subunit protein uS14Family
GA [auth S]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
GA [auth S]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
C [auth 2]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
C [auth 2]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
C [auth 2]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
C [auth 2]IPR013025Large ribosomal subunit protein uL23-likeFamily
EA [auth Q]IPR001971Small ribosomal subunit protein uS11Family
EA [auth Q]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
EA [auth Q]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
EA [auth Q]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
CA [auth O]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
CA [auth O]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
CA [auth O]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
CA [auth O]IPR000754Small ribosomal subunit protein uS9Family
CA [auth O]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
AA [auth M]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
AA [auth M]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
AA [auth M]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
AA [auth M]IPR000235Small ribosomal subunit protein uS7Family
AA [auth M]IPR023798Small ribosomal subunit protein uS7 domainDomain
Z [auth L]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
Z [auth L]IPR000529Small ribosomal subunit protein bS6Family
Z [auth L]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
Z [auth L]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
Z [auth L]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
Y [auth K]IPR000851Small ribosomal subunit protein uS5Family
Y [auth K]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
Y [auth K]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
Y [auth K]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
Y [auth K]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth K]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
Y [auth K]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
W [auth I]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
W [auth I]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
W [auth I]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
W [auth I]IPR004087K Homology domainDomain
W [auth I]IPR004044K Homology domain, type 2Domain
W [auth I]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
W [auth I]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
W [auth I]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
B [auth 1]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
B [auth 1]IPR001063Large ribosomal subunit protein uL22Family
B [auth 1]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
B [auth 1]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
B [auth 1]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
U [auth G]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
U [auth G]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
U [auth G]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
U [auth G]IPR001865Small ribosomal subunit protein uS2Family
L [auth AC],
M [auth AD]		IPR011773DNA-directed RNA polymerase, alpha subunitFamily
L [auth AC],
M [auth AD]		IPR011260RNA polymerase, alpha subunit, C-terminalDomain
L [auth AC],
M [auth AD]		IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeDomain
L [auth AC],
M [auth AD]		IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
L [auth AC],
M [auth AD]		IPR011262DNA-directed RNA polymerase, insert domainDomain
L [auth AC],
M [auth AD]		IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
K [auth AB]IPR043425NusG-likeFamily
K [auth AB]IPR001062Transcription antitermination protein, NusGFamily
K [auth AB]IPR036735NusG, N-terminal domain superfamilyHomologous Superfamily
K [auth AB]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
K [auth AB]IPR015869Transcription antitermination protein, NusG, bacteria, conserved siteConserved Site
K [auth AB]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth AB]IPR047050NusG, N-terminalDomain
K [auth AB]IPR005824KOWDomain
K [auth AB]IPR006645NusG-like, N-terminalDomain
J [auth AA]IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
J [auth AA]IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
J [auth AA]IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
J [auth AA]IPR007642RNA polymerase Rpb2, domain 2Domain
J [auth AA]IPR015712DNA-directed RNA polymerase, subunit 2Family
J [auth AA]IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
J [auth AA]IPR042107DNA-directed RNA polymerase, beta subunit, external 1 domain superfamilyHomologous Superfamily
J [auth AA]IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
J [auth AA]IPR007645RNA polymerase Rpb2, domain 3Domain
J [auth AA]IPR019462DNA-directed RNA polymerase, beta subunit, external 1 domainDomain
J [auth AA]IPR010243DNA-directed RNA polymerase beta subunit, bacterial-typeFamily
J [auth AA]IPR007644RNA polymerase, beta subunit, protrusionDomain
J [auth AA]IPR007641RNA polymerase Rpb2, domain 7Domain