6V9A

Agrobacterium tumefaciens ADP-Glucose pyrophosphorylase-S72D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.236 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Site directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory site of the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase

Alghamdi, M.A.Hussien, R.Zheng, Y.Patel, H.P.Iglesias, A.A.Liu, D.Ballicora, M.A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Glucose-1-phosphate adenylyltransferase440Agrobacterium fabrum str. C58Mutation(s): 1 
Gene Names: glgCAtu4076AGR_L_1560
EC: 2.7.7.27
UniProt
Find proteins for Q8U8L5 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Explore Q8U8L5 
Go to UniProtKB:  Q8U8L5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8U8L5
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CIT
Query on CIT

Download Ideal Coordinates CCD File 
AA [auth C],
AB [auth P],
CA [auth D],
CB [auth Q],
EA [auth E],
AA [auth C],
AB [auth P],
CA [auth D],
CB [auth Q],
EA [auth E],
EB [auth R],
GA [auth F],
GB [auth V],
IA [auth G],
IB [auth T],
KA [auth I],
MA [auth J],
PA [auth K],
SA [auth L],
U [auth H],
UA [auth M],
W [auth A],
WA [auth N],
YA [auth O],
Z [auth B]
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
BA [auth C],
BB [auth P],
DA [auth D],
DB [auth Q],
FA [auth E],
BA [auth C],
BB [auth P],
DA [auth D],
DB [auth Q],
FA [auth E],
FB [auth R],
HA [auth F],
HB [auth V],
JA [auth G],
JB [auth T],
LA [auth I],
NA [auth J],
OA [auth J],
QA [auth K],
RA [auth K],
TA [auth L],
V [auth H],
VA [auth M],
X [auth A],
XA [auth N],
Y [auth A],
ZA [auth O]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.236 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.231α = 107.998
b = 141.404β = 101.626
c = 228.648γ = 90.019
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-16
    Type: Initial release