6SGB

mt-SSU assemblosome of Trypanosoma brucei


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.

Saurer, M.Ramrath, D.J.F.Niemann, M.Calderaro, S.Prange, C.Mattei, S.Scaiola, A.Leitner, A.Bieri, P.Horn, E.K.Leibundgut, M.Boehringer, D.Schneider, A.Ban, N.

(2019) Science 365: 1144-1149

  • DOI: 10.1126/science.aaw5570
  • Primary Citation of Related Structures:  
    6SGB, 6SGA, 6SG9

  • PubMed Abstract: 
  • Mitochondrial ribosomes (mitoribosomes) are large ribonucleoprotein complexes that synthesize proteins encoded by the mitochondrial genome. An extensive cellular machinery responsible for ribosome assembly has been described only for eukaryotic cytosolic ribosomes ...

    Mitochondrial ribosomes (mitoribosomes) are large ribonucleoprotein complexes that synthesize proteins encoded by the mitochondrial genome. An extensive cellular machinery responsible for ribosome assembly has been described only for eukaryotic cytosolic ribosomes. Here we report that the assembly of the small mitoribosomal subunit in Trypanosoma brucei involves a large number of factors and proceeds through the formation of assembly intermediates, which we analyzed by using cryo-electron microscopy. One of them is a 4-megadalton complex, referred to as the small subunit assemblosome, in which we identified 34 factors that interact with immature ribosomal RNA (rRNA) and recognize its functionally important regions. The assembly proceeds through large-scale conformational changes in rRNA coupled with successive incorporation of mitoribosomal proteins, providing an example for the complexity of the ribosomal assembly process in mitochondria.


    Organizational Affiliation

    Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Otto-Stern-Weg 5, CH-8093 Zurich, Switzerland. andre.schneider@dcb.unibe.ch ban@mol.biol.ethz.ch.



Macromolecules

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Entity ID: 1
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uS5mA [auth CE]435Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 2
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bS6mB [auth CF]160Trypanosoma brucei bruceiMutation(s): 0 
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uS8mC [auth CH]282Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 4
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uS11mD [auth CK]326Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 5
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uS15mE [auth CO]429Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 6
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bS16mF [auth CP]188Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 7
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uS17mG [auth CQ]336Trypanosoma brucei bruceiMutation(s): 0 
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bS18mH [auth CR]320Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 9
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mS22I [auth Ca]602Trypanosoma brucei bruceiMutation(s): 0 
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mS23J [auth Cb]311Trypanosoma brucei bruceiMutation(s): 0 
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mS26K [auth Cd]440Trypanosoma brucei bruceiMutation(s): 0 
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mS34L [auth Cj]257Trypanosoma brucei bruceiMutation(s): 0 
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mS38M [auth Cn]250Trypanosoma brucei bruceiMutation(s): 0 
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mS41N [auth Cp]187Trypanosoma brucei bruceiMutation(s): 0 
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mS51 (KRIPP1)O [auth DD]812Trypanosoma brucei bruceiMutation(s): 0 
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mS56P [auth DI]407Trypanosoma brucei bruceiMutation(s): 0 
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mS59Q [auth DL]307Trypanosoma brucei bruceiMutation(s): 0 
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mS62 (KRIPP14)R [auth DO]282Trypanosoma brucei bruceiMutation(s): 0 
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mS63 (KRIPP16)S [auth DP]274Trypanosoma brucei bruceiMutation(s): 0 
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mS65T [auth DR]270Trypanosoma brucei bruceiMutation(s): 0 
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mS68U [auth DU]228Trypanosoma brucei bruceiMutation(s): 0 
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mS73V [auth DZ]94Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF2 (KRIPP2)W [auth F2]1024Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF3X [auth F3]966Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF5Y [auth F5]754Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF6Z [auth F6]676Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF7 (KRIPP10)AA [auth F7]679Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF8BA [auth F8]726Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF9CA [auth F9]608Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF10DA [auth FA]642Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF11EA [auth FB], FA [auth FC]579Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF13GA [auth FE]553Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF18HA [auth FJ]362Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF21IA [auth FM], JA [auth FN]370Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF22 (KRIPP17)KA [auth FO]334Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF23LA [auth FP]349Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 37
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mt-SAF24MA [auth FQ], NA [auth FR], OA [auth FS], PA [auth FT], QA [auth FU]307Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF26RA [auth FW]263Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF27 (KRIPP11)SA [auth FX]239Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF28TA [auth FY]188Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF29UA [auth FZ]178Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF30VA [auth Fa]171Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF31WA [auth Fb]151Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF32XA [auth Fc]148Trypanosoma brucei bruceiMutation(s): 0 
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mt-SAF33YA [auth Fd]143Trypanosoma brucei bruceiMutation(s): 0 
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UNK-AZA [auth UA]21Trypanosoma brucei bruceiMutation(s): 0 
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UNK-B, UNK-kAB [auth UB], ID [auth Uk]27Trypanosoma brucei bruceiMutation(s): 0 
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UNK-CBB [auth UC]10Trypanosoma brucei bruceiMutation(s): 0 
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UNK-D, UNK-M, UNK-Q, UNK-fCB [auth UD], LB [auth UM], PB [auth UQ], DD [auth Uf]9Trypanosoma brucei bruceiMutation(s): 0 
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UNK-E, UNK-PDB [auth UE], OB [auth UP]45Trypanosoma brucei bruceiMutation(s): 0 
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UNK-F, UNK-mEB [auth UF], KD [auth Um]11Trypanosoma brucei bruceiMutation(s): 0 
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UNK-GFB [auth UG]17Trypanosoma brucei bruceiMutation(s): 0 
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UNK-HGB [auth UH]5Trypanosoma brucei bruceiMutation(s): 0 
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UNK-I, UNK-NHB [auth UI], MB [auth UN]8Trypanosoma brucei bruceiMutation(s): 0 
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UNK-JIB [auth UJ]16Trypanosoma brucei bruceiMutation(s): 0 
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UNK-KJB [auth UK]24Trypanosoma brucei bruceiMutation(s): 0 
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UNK-LKB [auth UL]22Trypanosoma brucei bruceiMutation(s): 0 
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UNK-ONB [auth UO]30Trypanosoma brucei bruceiMutation(s): 0 
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UNK-YQB [auth UY]468Trypanosoma brucei bruceiMutation(s): 0 
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mS3mSB [auth CC]74Trypanosoma brucei bruceiMutation(s): 0 
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uS9mTB [auth CI]443Trypanosoma brucei bruceiMutation(s): 0 
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uS10mUB [auth CJ]817Trypanosoma brucei bruceiMutation(s): 0 
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uS14mVB [auth CN]166Trypanosoma brucei bruceiMutation(s): 0 
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uS19mWB [auth CS]244Trypanosoma brucei bruceiMutation(s): 0 
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mS29XB [auth Cg]498Trypanosoma brucei bruceiMutation(s): 0 
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mS33YB [auth Ci]181Trypanosoma brucei bruceiMutation(s): 0 
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mS35ZB [auth Ck]874Trypanosoma brucei bruceiMutation(s): 0 
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mS49AC [auth DB]1181Trypanosoma brucei bruceiMutation(s): 0 
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mS50BC [auth DC]1165Trypanosoma brucei bruceiMutation(s): 0 
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mS52CC [auth DE]747Trypanosoma brucei bruceiMutation(s): 0 
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mS53DC [auth DF]666Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 73
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mS54EC [auth DG]631Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 74
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mS55 (KRIPP8)FC [auth DH]581Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 75
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mS57GC [auth DJ]396Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 76
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mS58HC [auth DK]324Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 77
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mS67IC [auth DT]247Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 78
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mS69JC [auth DV]183Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 79
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mS70KC [auth DW]179Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 80
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mS71LC [auth DX]169Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 81
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mS72MC [auth DY]163Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57YD4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 82
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mt-SAF1 (RSM22)NC [auth F1]1041Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 83
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mt-SAF4OC [auth F4]811Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 84
MoleculeChainsSequence LengthOrganismDetailsImage
mt-SAF12 (KRIPP18)PC [auth FD]579Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 85
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mt-SAF14QC [auth FF]474Trypanosoma brucei bruceiMutation(s): 0 
EC: 2.1.1
UniProt
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Entity ID: 86
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mt-SAF15RC [auth FG]463Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 87
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mt-SAF16SC [auth FH]457Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 88
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mt-SAF17TC [auth FI]445Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 89
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mt-SAF19UC [auth FK]372Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57XS8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 90
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mt-SAF20VC [auth FL]353Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 91
MoleculeChainsSequence LengthOrganismDetailsImage
mt-SAF25WC [auth FV]264Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38C60 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 92
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mt-SAF34XC [auth Fe]123Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 93
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UNK-aYC [auth Ua]47Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 94
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UNK-bZC [auth Ub]42Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 95
MoleculeChainsSequence LengthOrganismDetailsImage
UNK-cAD [auth Uc]12Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 96
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UNK-dBD [auth Ud]59Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 97
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UNK-eCD [auth Ue]29Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 98
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UNK-gED [auth Ug]167Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 99
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UNK-hFD [auth Uh]255Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 100
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UNK-iGD [auth Ui]32Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 101
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UNK-jHD [auth Uj]19Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 102
MoleculeChainsSequence LengthOrganismDetailsImage
UNK-lJD [auth Ul]14Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 103
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UNK-xLD [auth Ux]110Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 60
MoleculeChainsLengthOrganismImage
9S rRNARB [auth CA]620Trypanosoma brucei brucei
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Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GTP (Subject of Investigation/LOI)
Query on GTP

Download Ideal Coordinates CCD File