6SB3
CryoEM structure of murine perforin-2 ectodomain in a pre-pore form
- PDB DOI: https://doi.org/10.2210/pdb6SB3/pdb
- EM Map EMD-10134: EMDB EMDataResource
- Classification: TOXIN
- Organism(s): Mus musculus
- Expression System: Homo sapiens
- Mutation(s): No 
- Membrane Protein: Yes  OPM
- Deposited: 2019-07-18 Released: 2020-02-05 
- Funding Organization(s): Medical Research Council (United Kingdom)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.50 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Macrophage-expressed gene 1 protein | 646 | Mus musculus | Mutation(s): 0  Gene Names: Mpeg1 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for A1L314 (Mus musculus) Explore A1L314  Go to UniProtKB:  A1L314 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1L314 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG (Subject of Investigation/LOI) Query on NAG | AA [auth F] BA [auth F] CA [auth G] DA [auth G] EA [auth H] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.50 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | RELION |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-02-05  Deposition Author(s): Ni, T., Yu, X., Gilbert, R.J.C.
Funding Organization | Location | Grant Number |
---|---|---|
Medical Research Council (United Kingdom) | United Kingdom | MR/N000331/1 |
Revision History (Full details and data files)
- Version 1.0: 2020-02-05
Type: Initial release - Version 1.1: 2020-02-26
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary