6QPW

Structural basis of cohesin ring opening


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The structure of the cohesin ATPase elucidates the mechanism of SMC-kleisin ring opening.

Muir, K.W.Li, Y.Weis, F.Panne, D.

(2020) Nat Struct Mol Biol 27: 233-239

  • DOI: https://doi.org/10.1038/s41594-020-0379-7
  • Primary Citation of Related Structures:  
    6QPQ, 6QPW

  • PubMed Abstract: 

    Genome regulation requires control of chromosome organization by SMC-kleisin complexes. The cohesin complex contains the Smc1 and Smc3 subunits that associate with the kleisin Scc1 to form a ring-shaped complex that can topologically engage chromatin to regulate chromatin structure. Release from chromatin involves opening of the ring at the Smc3-Scc1 interface in a reaction that is controlled by acetylation and engagement of the Smc ATPase head domains. To understand the underlying molecular mechanisms, we have determined the 3.2-Å resolution cryo-electron microscopy structure of the ATPγS-bound, heterotrimeric cohesin ATPase head module and the 2.1-Å resolution crystal structure of a nucleotide-free Smc1-Scc1 subcomplex from Saccharomyces cerevisiae and Chaetomium thermophilium. We found that ATP-binding and Smc1-Smc3 heterodimerization promote conformational changes within the ATPase that are transmitted to the Smc coiled-coil domains. Remodeling of the coiled-coil domain of Smc3 abrogates the binding surface for Scc1, thus leading to ring opening at the Smc3-Scc1 interface.


  • Organizational Affiliation

    European Molecular Biology Laboratory, Grenoble, France. kmuir@mrc-lmb.cam.ac.uk.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Structural maintenance of chromosomes protein,Structural maintenance of chromosomes protein242Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0066330
UniProt
Find proteins for G0SGH3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SGH3 
Go to UniProtKB:  G0SGH3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SGH3
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Sister chromatid cohesion protein 185Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MCD1PDS3RHC21SCC1YDL003WYD8119.04
UniProt
Find proteins for Q12158 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12158 
Go to UniProtKB:  Q12158
Entity Groups  
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UniProt GroupQ12158
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Structural maintenance of chromosomes protein 3,Structural maintenance of chromosomes protein 3535Saccharomyces cerevisiae S288CMutation(s): 2 
Gene Names: SMC3YJL074CJ1049
UniProt
Find proteins for P47037 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P47037 
Go to UniProtKB:  P47037
Entity Groups  
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UniProt GroupP47037
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Sister chromatid cohesion protein 1,Structural maintenance of chromosomes proteinD [auth E]372Saccharomyces cerevisiae S288CThermochaetoides thermophila DSM 1495
This entity is chimeric
Mutation(s): 3 
Gene Names: MCD1PDS3RHC21SCC1YDL003WYD8119.04CTHT_0066330
UniProt
Find proteins for Q12158 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12158 
Go to UniProtKB:  Q12158
Find proteins for G0SGH3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SGH3 
Go to UniProtKB:  G0SGH3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ12158G0SGH3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2.1b
MODEL REFINEMENTPHENIX1.14

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-05
    Type: Initial release
  • Version 1.1: 2020-02-26
    Changes: Database references
  • Version 1.2: 2020-03-18
    Changes: Database references