6Q6I | pdb_00006q6i

Lysine decarboxylase A from Pseudomonas aeruginosa

• PDB DOI: https://doi.org/10.2210/pdb6Q6I/pdb
• EM Map EMD-4468: EMDB EMDataResource

• Classification: OXIDOREDUCTASE
• Organism(s): Pseudomonas aeruginosa
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-12-11 Released: 2019-09-25 
• Deposition Author(s): Kandiah, E., Gutsche, I.
• Funding Organization(s): French National Research Agency, European Research Council

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure of Lysine decarboxylase A from Pseudomonas aeruginosa

Kandiah, E., Gutsche, I.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D5  (Explore in 3D)
Global Stoichiometry: Homo 10-mer - A10 

Biological assembly 1 generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 83.1 kDa 
• Atom Count: 5,720 
• Modeled Residue Count: 749 
• Deposited Residue Count: 751 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Biodegradative arginine decarboxylase	A	751	Pseudomonas aeruginosa	Mutation(s): 0  Gene Names:  adiA, adiA_2, CAZ10_25795, CGU42_31920, DY979_03865, DZ962_05275, EB236_18185, EGV95_19425, EGY23_25530, IPC3_20945, IPC669_04165, PA34_018150, PAERUG_E15_London_28_01_14_10034, PAMH19_5219, RW109_RW109_04238 EC: 4.1.1.19 (PDB Primary Data), 4.1.1.18 (PDB Primary Data)
UniProt
Find proteins for Q9I2S7 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I2S7  Go to UniProtKB:  Q9I2S7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PLP	B [auth A]	PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	1.4
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2019-09-25 
Deposition Author(s): Kandiah, E., Gutsche, I.

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Funding Organization	Location	Grant Number
French National Research Agency	France	ANR-12-JSV8-0002
European Research Council	France	ERC 647784

Revision History  

• Version 1.0: 2019-09-25
  Type: Initial release
  
• Version 1.1: 2019-10-23
  Changes: Data collection, Data processing
• Version 1.2: 2025-04-09
  Changes: Data collection, Database references, Derived calculations, Structure summary