6NB1

Crystal structure of Escherichia coli ClpP protease complexed with small molecule activator, ACP1-06


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

ClpP protease activation results from the reorganization of the electrostatic interaction networks at the entrance pores.

Mabanglo, M.F.Leung, E.Vahidi, S.Seraphim, T.V.Eger, B.T.Bryson, S.Bhandari, V.Zhou, J.L.Mao, Y.Q.Rizzolo, K.Barghash, M.M.Goodreid, J.D.Phanse, S.Babu, M.Barbosa, L.R.S.Ramos, C.H.I.Batey, R.A.Kay, L.E.Pai, E.F.Houry, W.A.

(2019) Commun Biol 2: 410-410


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP-dependent Clp protease proteolytic subunit
A, B, C, D, E, F, G, H, I, J, K, L, M, N
207Escherichia coli K-12Mutation(s): 0 
Gene Names: clpPlopPb0437JW0427
EC: 3.4.21.92
Find proteins for P0A6G7 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A6G7
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
KHS
Query on KHS

Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L, M, N
N-{2-[(2-chlorophenyl)sulfanyl]ethyl}-2-methyl-2-{[5-(trifluoromethyl)pyridin-2-yl]sulfonyl}propanamide
C18 H18 Cl F3 N2 O3 S2
OUZIIFOEMPAZKX-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L, M, N
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.211 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 190.985α = 90
b = 101.094β = 98.29
c = 155.194γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaXNE-86945
Canadian Institutes of Health Research (CIHR)CanadaPJT-148564

Revision History 

  • Version 1.0: 2019-11-13
    Type: Initial release
  • Version 1.1: 2020-01-08
    Changes: Author supporting evidence
  • Version 1.2: 2020-01-29
    Changes: Database references