6L8X

Crystal structure of Siraitia grosvenorii ugt transferase mutant2

PDB DOI: https://doi.org/10.2210/pdb6L8X/pdb

Classification: TRANSFERASE
Organism(s): Siraitia grosvenorii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2019-11-07 Released: 2020-04-08
Deposition Author(s): Li, J., Shan, N., Yang, J.G., Liu, W.D., Sun, Y.X.
Funding Organization(s): National Science Foundation (China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.218
R-Value Work: 0.188
R-Value Observed: 0.190

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Efficient O-Glycosylation of Triterpenes Enabled by Protein Engineering of Plant Glycosyltransferase UGT74AC1

Li, J., Yang, J.G., Mu, S., Shang, N., Liu, C., Zhu, Y., Cai, Y., Liu, P., Lin, J., Liu, W.D., Sun, Y.X., Ma, Y.

(2020) ACS Catal 10: 3629-3639

DOI: https://doi.org/10.1021/acscatal.9b05232

Macromolecule Content

Total Structure Weight: 51.22 kDa
Atom Count: 3,914
Modelled Residue Count: 450
Deposited Residue Count: 454
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycosyltransferase	A	454	Siraitia grosvenorii	Mutation(s): 2 Gene Names: UDPG1 EC: 2.4.1
UniProt
Find proteins for K7NBW3 (Siraitia grosvenorii) Explore K7NBW3 Go to UniProtKB: K7NBW3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	K7NBW3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.218
R-Value Work: 0.188
R-Value Observed: 0.190
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.614	α = 90
b = 69.042	β = 90
c = 143.991	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
MrBUMP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-04-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (China)	China	--

Revision History (Full details and data files)

Version 1.0: 2020-04-08
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.