6L8X | pdb_00006l8x

Crystal structure of Siraitia grosvenorii ugt transferase mutant2

PDB DOI: https://doi.org/10.2210/pdb6L8X/pdb

Classification: TRANSFERASE
Organism(s): Siraitia grosvenorii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2019-11-07 Released: 2020-04-08
Deposition Author(s): Li, J., Shan, N., Yang, J.G., Liu, W.D., Sun, Y.X.
Funding Organization(s): National Science Foundation (China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free:
0.218 (Depositor), 0.224 (DCC)
R-Value Work:
0.188 (Depositor), 0.200 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Efficient O-Glycosylation of Triterpenes Enabled by Protein Engineering of Plant Glycosyltransferase UGT74AC1

Li, J., Yang, J.G., Mu, S., Shang, N., Liu, C., Zhu, Y., Cai, Y., Liu, P., Lin, J., Liu, W.D., Sun, Y.X., Ma, Y.

(2020) ACS Catal 10: 3629-3639

DOI: https://doi.org/10.1021/acscatal.9b05232

Macromolecule Content

Total Structure Weight: 51.22 kDa
Atom Count: 3,914
Modeled Residue Count: 450
Deposited Residue Count: 454
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycosyltransferase	A	454	Siraitia grosvenorii	Mutation(s): 2 Gene Names: UDPG1 EC: 2.4.1 (PDB Primary Data), 2.4.1.350 (UniProt)
UniProt
Find proteins for K7NBW3 (Siraitia grosvenorii) Explore K7NBW3 Go to UniProtKB: K7NBW3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	K7NBW3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.218 (Depositor), 0.224 (DCC)
R-Value Work: 0.188 (Depositor), 0.200 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.614	α = 90
b = 69.042	β = 90
c = 143.991	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
MrBUMP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-04-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (China)	China	--

Revision History (Full details and data files)

Version 1.0: 2020-04-08
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-11-20
Changes: Structure summary