Download MendeleyBinding pose 1 of 2-CF3 bound AsqJ complex
Liao, H.J., Chan, N.L.(2020) J Am Chem Soc
6KD9
Binding pose 1 of 2-CF3 bound AsqJ complex
- PDB DOI: https://doi.org/10.2210/pdb6KD9/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aspergillus nidulans FGSC A4
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-07-01 Released: 2020-03-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.44 Å
- R-Value Free: 0.285
- R-Value Work: 0.218
- R-Value Observed: 0.221
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Iron/alpha-ketoglutarate-dependent dioxygenase asqJ | A [auth B], B [auth F] | 327 | Aspergillus nidulans FGSC A4 | Mutation(s): 0 Gene Names: asqJ, AN9227 EC: 1.14 |  |
UniProt | |||||
Find proteins for Q5AR53 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)) Explore Q5AR53 Go to UniProtKB: Q5AR53 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5AR53 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CV3 (Subject of Investigation/LOI) Query on CV3 | D [auth B], G [auth F] | (3~{Z})-4-methyl-3-[[4-(trifluoromethyl)phenyl]methylidene]-1~{H}-1,4-benzodiazepine-2,5-dione C18 H13 F3 N2 O2 NVEJUUHKRHQWHW-GDNBJRDFSA-N |  | ||
| SIN Query on SIN | E [auth B], H [auth F] | SUCCINIC ACID C4 H6 O4 KDYFGRWQOYBRFD-UHFFFAOYSA-N |  | ||
| FE Query on FE | C [auth B], F | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.44 Å
- R-Value Free: 0.285
- R-Value Work: 0.218
- R-Value Observed: 0.221
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.755 | α = 90 |
| b = 73.352 | β = 90 |
| c = 121.434 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2020-03-18 Deposition Author(s): Liao, H.J., Chan, N.L.
Revision History (Full details and data files)
- Version 1.0: 2020-03-18
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2024-03-20
Changes: Source and taxonomy
