6KD9

Binding pose 1 of 2-CF3 bound AsqJ complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.221 

wwPDB Validation 3D Report Full Report



Literature

Binding pose 1 of 2-CF3 bound AsqJ complex

Liao, H.J.Chan, N.L.

(2020) J Am Chem Soc 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Iron/alpha-ketoglutarate-dependent dioxygenase asqJBF327Aspergillus nidulans FGSC A4Mutation(s): 0 
Gene Names: asqJAN9227
EC: 1.14
Find proteins for Q5AR53 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139))
Explore Q5AR53 
Go to UniProtKB:  Q5AR53
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CV3
Query on CV3

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B, F
(3~{Z})-4-methyl-3-[[4-(trifluoromethyl)phenyl]methylidene]-1~{H}-1,4-benzodiazepine-2,5-dione
C18 H13 F3 N2 O2
NVEJUUHKRHQWHW-GDNBJRDFSA-N
 Ligand Interaction
SIN
Query on SIN

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B, F
SUCCINIC ACID
C4 H6 O4
KDYFGRWQOYBRFD-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

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B, F
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.221 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.755α = 90
b = 73.352β = 90
c = 121.434γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2019-07-01 
  • Released Date: 2020-03-18 
  • Deposition Author(s): Liao, H.J., Chan, N.L.

Revision History 

  • Version 1.0: 2020-03-18
    Type: Initial release